Populus trichocarpa (black cottonwood): 7486602
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Entry
7486602 CDS
T01077
Name
(RefSeq) serine/arginine-rich splicing factor SC35 isoform X3
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7486602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7486602
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
7486602
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
7486602
NCBI-ProteinID:
XP_024456216
LinkDB
All DBs
Position
5:16526139..16529973
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AA seq
270 aa
AA seq
DB search
MSHFGRSGPPDIRDTFSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPRDRRTGESRGFA
FVRYKYAEEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERIRSGRIVESSSKIKGRSRSR
SPRPRYRDGYRDKDKDRDYRRRSRSRSKDRYDRDGYRGRDRDYHPRSVSHSPDHRKEYGR
GHDEKRHRRSQSHGSPNSPRSPSPHRAYPRDGSPNGRNDNKHSPNGSPNSPRSPSPHRAH
PRDGSPNGRNDNKRSPTSKSVSPCNEPVDS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatttcggccgatctggtcctccagatatcagagacaccttttctctcctcgtt
ctcaacatcactttccgaaccactgccgacgatcttttccctctctttgacaagtacggc
aaggtagtcgatgtattcataccccgcgatcggaggactggagaatcgagaggctttgcg
tttgtgaggtataaatacgctgaagaggcgcagaaagcagttgataggcttgatgggaga
gttgtagatgggagagagattatggtgcaattcgctaagtatgggcccaacgctgagcga
attcggagtgggaggatagtggaatcatcttcaaagattaaaggtaggtccagaagccgc
agccctcgtccaaggtatcgagatggctatagggacaaggacaaggatagggattacaga
aggagaagtcgcagtagaagcaaggatcgttatgaccgtgatgggtatcgaggtagggat
agagattatcatccccgaagcgtgagccacagcccagatcatcgcaaagaatatggtaga
ggacatgatgagaaacgacaccgtcggagccagtctcatggaagccctaattctccaagg
agcccttctccacacagggcatatcctagggatggaagtcctaatggacgtaatgataac
aaacactcacctaatggaagccctaattctccaaggagcccttctccacacagggcacat
cctagggatggaagtcctaatggacgcaatgataacaaacgctcacctacttcaaagagt
gtctcaccttgcaatgaaccagttgattcttga
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