Populus trichocarpa (black cottonwood): 7486662
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Entry
7486662 CDS
T01077
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
7486662
03410 Base excision repair
7486662
03420 Nucleotide excision repair
7486662
03430 Mismatch repair
7486662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
7486662
03400 DNA repair and recombination proteins [BR:
pop03400
]
7486662
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
7486662
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
7486662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
RCF1-5-like_lid
PTCB-BRCT
Rad17
AAA_22
AAA_30
AAA_19
AAA_assoc_2
RuvB_N
BRCT_2
nSTAND3
Sigma54_activ_2
RNA_helicase
AAA_18
AAA_5
AAA_14
AAA_24
AAA_6
AAA_17
DNAX_ATPase_lid
AAA_16
Gp44_lid
NTPase_1
Zeta_toxin
TsaE
AAA_28
SurA_N
Motif
Other DBs
NCBI-GeneID:
7486662
NCBI-ProteinID:
XP_024441424
LinkDB
All DBs
Position
1:complement(22091426..22102524)
Genome browser
AA seq
969 aa
AA seq
DB search
MQRDIRKWFMKAHDKGNDNAATNAEKKPPPTEPKTETPVCGGQEGSGRRKNSKYFAANKQ
KQKEDKEIEDLPAKRKAQNDGVQSVKPPPSKKVHKVDDEEEDDDFSLPKKKNDASPSKKL
KSSSGRGIAQKPVHVNESDEDDVKDTESPLKSGGRGRGGRGVSGAPSGGRGRGGGRGGFM
NFGEKKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSK
KTSYLLCDEDIEGRKSSKAKELGTPFLTEDGLFDKILSSKNSKAPAREDSKVSVEKVTSL
PKKSPQKADLKSSSLMSNATHKDLGAGSQQAKQKDQAIQRSSLIWTEKYRPKVPNEMIGN
PSLVTQLHNWLKNWNEQFHDTGNKGKGKKQNDSTAKKAVLLSGPPGIGKTTSAKLVSKML
GFQAIEVNASDNRGKADAKIFKGISGSNANCIKELISNEALGFEMDRSKHLKTVLIMDEV
DGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKR
LTQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDVRQRLQGSAKD
EDISPFTAVDKLFGFSGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSIGKDDNGMK
RMSLIARAAESIADGDIINVQIRRYRQWQLSQTGSLSSCIIPAALLHGSRETLEQGERNF
NRFGGWLGKNSTAGKNSRLLEDLHVHLLASRESNMGRETLRLDYLTVLLKQLTDPLRVLP
KDEAVEKVVEFMNVYSISQEDMDTIVELSKFQGHGNPLDGIPSTVKAALTRAYKEERKSR
MVRAADLVTLPGKKKAPKKRVAAILEPSDDGLREENGDAVAESEEENSSDTDDMEGTGNG
EKLQSELQSLNSKGIQVEVELKCRKESSKSKKTPTGRGKGGSASTEKKPAGRGRGGSGSS
EKPGAKRKR
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgagatattcgaaaatggtttatgaaggcacacgataaaggcaatgacaatgct
gctaccaatgctgagaagaaacctcctccaactgagccgaagaccgaaacacctgtgtgt
ggaggacaagaaggttcaggaaggaggaaaaatagcaagtattttgcggcaaataaacag
aagcaaaaagaggataaagaaatagaggatcttcctgctaagaggaaagctcaaaatgat
ggtgtccaatctgtgaaacccccaccttctaaaaaggttcacaaagttgatgatgaagaa
gaagatgatgatttttccttgcccaagaagaagaatgatgcttctcctagtaagaaattg
aagagcagttcaggcaggggaattgctcagaaacctgtacatgttaacgaaagtgatgaa
gatgatgtgaaggatactgaatctcctctgaaatctggtggcagaggtcgtggtggtagg
ggtgtgtctggggcaccatctggtggaaggggcagaggtggtggacggggaggatttatg
aactttggtgagaagaaagatcctccacacaaaggagaaaaggaagtccctgaaggtgct
cctaattgtttagctggtttaacttttgtgattagtggaacgcttgacagtttggaaaga
gaagaggcagaagacttgattaaaaggcatggaggtcgtgttactggatctgtcagcaag
aaaacgagttatcttttatgtgatgaggatattgagggacggaaatcttcaaaagccaaa
gaacttggcacaccttttcttaccgaggatgggctgtttgataagatcctctcctcaaag
aattcaaaagccccggcacgagaagactcaaaggtgtctgtggagaaagtcacatctctg
ccaaagaaaagtcctcagaaagcagacttgaagagtagctctttgatgtcaaatgcaacc
cacaaagatttgggtgcaggttcccagcaagcaaagcagaaagatcaagctatacaacgc
tcatccctaatatggacagaaaaatataggccaaaggttccaaatgagatgataggaaat
ccatcactggttactcagctccataattggttgaagaactggaatgagcagttccatgac
actggaaacaagggaaagggcaaaaaacaaaacgattctaccgcaaaaaaagctgttcta
ttgagtggaccacctggaatagggaaaacaacatcagcaaagctggtctctaaaatgctc
ggtttccaggcaatcgaggtaaatgccagtgacaatcgtgggaaggcagatgccaagatt
tttaaaggaatcagtggaagcaatgcaaattgcataaaggaacttatcagcaatgaagct
ctgggttttgagatggataggtcaaagcatctgaaaacagttttgatcatggatgaggta
gatggaatgtctgctggggatagaggtggagttgctgatcttattgctagtataaagatt
tccaaaattcctatcatctgcatctgtaatgaccgttatagtcagaagctaaaaagtctt
gtgaactattgcttgcttctcagtttccggaagcctacaaaacaacagatggcaaagagg
ttaactcaagttgcaaatgcagaaggccttcaagttaatgagattgcacttgaggagctt
gcagaaagggtgaatggagatatgcgcatggcattaaaccaattacaatatatgagcctc
tcaatgtcagtcattaattatgatgatgtaagacagcgccttcaaggaagtgcaaaagat
gaagatatttcaccattcaccgctgtggataagctgtttggctttagtggaggaaagctg
agaatggatgagcggattgacctcagtatgagtgatcctgacttggtccctcttcttata
caggaaaactacattaattataggccaagttcaattggtaaagatgacaatgggatgaaa
cgtatgagcttgattgcacgtgctgctgagtctattgccgatggagatataataaatgtg
cagatccgaagatatcgacagtggcagctctctcaaactggttctctgtcatcctgtatc
attcctgctgcattgttgcatggatcaagggagacacttgaacagggtgaacggaatttt
aatagatttggtgggtggctgggaaagaattcaacagcgggcaaaaattcgaggcttttg
gaggatctgcatgttcatctccttgcttctcgtgaatctaatatggggagggagacactt
cgacttgactaccttacagttcttctgaaacaattgacagatcctcttcgggtgctgcct
aaggatgaagctgttgagaaggttgtggagttcatgaatgtatactcaataagtcaggag
gatatggataccattgtggagttatcaaaatttcaggggcatgggaatccattggacggc
ataccatcaactgtcaaagcggctctgacaagagcatataaagaagaaagaaaatcaagg
atggtacgagctgcagatttagtcacacttcctggaaagaagaaggcccctaagaagcgt
gttgcagctattctagaaccttctgatgatggtctaagagaggaaaatggtgacgcggtg
gctgaaagtgaagaagaaaactcatctgacacagatgatatggaaggaactggtaatggc
gagaagctgcagtctgagcttcagagtttaaattcaaaaggaatccaagtagaggtggaa
ctgaagtgcagaaaggaaagttcaaagtctaagaagacccctacaggaagaggaaaaggt
gggtctgcatctactgaaaaaaaaccagcgggcagagggcgaggtggttctggttcctcg
gagaaacctggagctaagagaaagagatga
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