Populus trichocarpa (black cottonwood): 7486772
Help
Entry
7486772 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT3
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7486772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7486772
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7486772
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
7486772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
FAIM1
Motif
Other DBs
NCBI-GeneID:
7486772
NCBI-ProteinID:
XP_002320867
UniProt:
B9I8Y6
LinkDB
All DBs
Position
14:complement(6507432..6510646)
Genome browser
AA seq
330 aa
AA seq
DB search
MELDSIECVPSSDLTDEDEIHHHHHLHHFPSVSKPHTTTTTTNNNNNNNTNTVASSFHST
SVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAE
SLELPCKYMSLGCPEIFPYYSKLKHENLCNFRPYNCPYAGSECVIVGDIPFLVTHLRDDH
KVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRF
MGDETEARNYSYSLEVGGNGRKLIWEGMPRSIRDSHRKVRDSHDGLVIQRNMALFFSGGD
RKELKLRVTGRIWKEQQNPEGGACIPNLCS
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggaattggatagcattgaatgtgtgccatcctcagatttaacagatgaggatgagatc
caccaccaccaccatctccatcatttcccttctgtttcaaagccacacaccaccaccacc
accaccaataataataacaataacaatactaatactgtggcttcttcttttcactccact
agtgttcatgagctccttgaatgccctgtttgtaccaattctatgtaccctcctattcat
cagtgccacaatggccatacactctgttcaacctgtaaaacacgagtacacaatcggtgt
cccacttgtagacaggagcttggtgacattagatgtctagctttggaaaaagtagctgaa
tcactcgagctaccttgcaaatacatgtcacttggatgcccagagatttttccatactac
agtaaactaaaacatgagaacttgtgcaattttaggccatacaactgtccatatgctgga
tcagagtgtgttattgttggggatatcccattccttgttactcatctgagggatgatcac
aaagtggacatgcattctgggtgtactttcaaccatcgctatgtcaagtctaatcctcgt
gaagtagaaaatgcaacatggatgttaacagttttccactgttttggccagtatttctgc
cttcattttgaagctttccagcttgggatggctcctgtttatatggcattcctcagattc
atgggtgatgagacagaagctcggaattacagctacagcctggaggttgggggaaatggt
cggaaacttatttgggaaggcatgccacggagtataagagatagccacaggaaggttagg
gacagccatgatggacttgttatacaacgtaacatggcacttttcttctctggaggagat
aggaaggagttaaagctgcgagttacaggacggatatggaaagaacagcagaacccagaa
ggtggggcatgcattcccaacctttgtagttag
DBGET
integrated database retrieval system
