Populus trichocarpa (black cottonwood): 7486786
Help
Entry
7486786 CDS
T01077
Name
(RefSeq) glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1
KO
K14164
glycyl-tRNA synthetase [EC:
6.1.1.14
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
7486786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
7486786
Enzymes [BR:
pop01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.14 glycine---tRNA ligase
7486786
Transfer RNA biogenesis [BR:
pop03016
]
Prokaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
7486786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_synt_2f
tRNA-synt_2e
DALR_1
Motif
Other DBs
NCBI-GeneID:
7486786
NCBI-ProteinID:
XP_002320880
UniProt:
B9I906
LinkDB
All DBs
Position
14:3162789..3180012
Genome browser
AA seq
1078 aa
AA seq
DB search
MATLALPLVISVLKPQFTRLFLFRSPATVVGRPNANRFFLNRHRPRPRHFTKTTASAIST
NSSIQQHSSTNPYNEPQNTSVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTF
LRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSAL
GVDVNAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPISVEITY
GLERILMLLQGVDHFKKIRYADGITYGELFLENEKEMSAYYLEHASVHHLQKHFDFFEEE
ARSLLASGLPIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTR
ESLGHPLGTVSEPAQLVSAKELLEAAVKKVHDEQRFFVLEIGTEEMPPQDVVHAGQQLKD
LVLQLLEKQRLSHGKVEAFGTPRRLVVCVESLSTKQAEIELEVRGPPVSKAFDQEGNPTK
AAEGFCRRYNISLDSLFRKVDGKTEYVHAHVRETARFALEILSEDLPSTISKISFPKSMR
WNSQVMFSRPIRWIMALHGDVVVPFAFAGVLSGNLSYGLRNTPSATVQVESAESYEGVMQ
NAGINIEIEGRKRSILEQSNELAKSVKGRILIQESLLNEVVNLVEAPVPVLGKFKESFLE
LPEDLLTMVMQKHQKYFAITDDSGRLLPFFIAVANGAINETVVKKGNEAVLRARYEDAKF
FYEMDTRKKFSEFRNQLDGILFHEKLGTMLDKMMRVENMITKLTVELGVNEDVIQVVQDA
ASLAMSDLATAVVTEFTALSGIMARHYALREGYSAQIAEALLEITLPRFSGDMVPKTDAG
IVLAIADRLDSLVGLFAAGCQPSSANDPFGLRRISYALVQILVDNDKNLDLVRALRLAAD
VQPIKADVSMINDVHLFVTRRLEQFLVDKGIRPEIVRSVLAERASSPCLAAKTAYKMEAL
SRENLFPKVVEAYSRPTRIVRGKDVDTDMKVDEAAFETDEERALWSTFTSTKSKIYPGIE
IDEFVEISSELLQPLEDFFNNVFVMVEDERIRKNRLALLNKIADLPRGIADLSVLPGF
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccctcgcgctcccgctagtcatatccgttttaaaaccccaattcacccgcctc
ttcctcttccgctcccccgccaccgttgtcggaaggccaaacgctaaccgcttttttctc
aatcgccaccgcccccgcccccgccacttcactaaaaccaccgcctccgctattagtacc
aattcttctattcaacagcattcctcaacaaacccttacaatgagcctcaaaacacctct
gtccctactttccaacaagcaattcagcgactccaggaatattgggcttcagttggatgt
gcagtgatgcagtgtagcaatacagaggttggagccgggactatgaatcctcttacattc
ttaagagttcttggtcctgaaccatggaatgtggcgtacgtggagcctagtattcgccca
gatgatagtcgttatggggaaaacccaaacagactacagcgtcacacacagtttcaggtt
atactaaaacctgatcctggaaattcacaagacctatttattcgaagtctctctgcgtta
ggtgttgatgttaatgcacatgatatacgatttgtggaggacaattgggagagcccggta
cttggcgcttggggtttgggctgggaaatctggatggatgggatggagatcactcaattc
acctactttcagcaggctggaagtcttcaactgtcgcccatatctgttgaaatcacttac
ggcctcgagcgcatcctcatgttgcttcagggagttgaccattttaagaaaattcgatat
gctgatggcattacatatggggagttgttcttggaaaatgagaaggaaatgagtgcgtat
tatttagaacatgccagtgttcatcatcttcaaaagcactttgatttttttgaggaagaa
gcccgttccttgcttgcctctggtcttccaatccctgcgtatgatcagctactgaagacc
tctcatgctttcaatatcttagattctagaggttttgtcggggtaacagagcgtgctcga
tattttggtcgaatgcgtagcttagctcgtcaatgtgctcaactttggttaaagaccagg
gaatcccttggacatcctctgggtactgtttctgaacctgctcaacttgtatctgctaaa
gagcttttggaggcagctgtcaaaaaggtgcatgatgagcaaaggttttttgttcttgaa
attggtactgaagagatgcctcctcaagatgtagttcatgcagggcagcaactcaaagat
ttagtgttgcaattgctagagaaacaacgattgagtcatggcaaagttgaagcttttggt
actcctcgccgactagtggtttgtgttgagagtctttccactaagcaagctgagattgag
cttgaggttcgaggacctcctgtttcaaaggcctttgatcaagaaggaaatcctacaaag
gctgctgagggtttttgtcgtagatacaacatatcattggactcattgtttagaaaggtt
gatggcaaaacggagtatgtacatgcccatgtaagggagactgcacgatttgctttggag
attttatctgaagatttgcccagtaccatcagtaaaatatcattcccaaagtcaatgcgc
tggaactctcaggtcatgttcagcagaccaattcgttggattatggccttgcatggagat
gtggttgttccatttgcatttgctggagttttgagtgggaacctatcttatggccttcgt
aataccccctcagctactgttcaggttgaaagtgcagaatcttatgaaggtgtaatgcaa
aatgctggaattaatattgaaattgagggtcgaaaacgaagcatcttggagcaatctaat
gaattagcaaaaagtgtcaaaggacgcatccttattcaggaaagcttacttaatgaggtt
gtcaatcttgttgaggcaccagttcctgtgcttgggaagtttaaagagtccttcttggaa
cttccagaagatcttttaacaatggtcatgcaaaaacaccagaagtatttcgccataact
gatgatagtggaaggctgctgccattttttattgctgtggcaaatggagcaatcaatgaa
accgtggtaaagaaagggaatgaagctgtgcttagagctcgctatgaagatgcaaaattt
ttctatgagatggatacacgcaagaagttctccgagttccgaaatcaactagatgggatt
ctttttcatgaaaagttaggaacaatgcttgacaagatgatgcgcgttgaaaacatgatc
accaaactaactgtggagttgggagttaacgaagatgtgattcaggttgtccaggatgcg
gcatcgcttgctatgtcagatcttgctactgctgttgtgacagaattcactgccctttca
ggaataatggcacgccattatgctcttagggaaggctattcagcacagattgctgaggcc
ttgctagaaattacacttcctcgattttctggagatatggttccaaaaactgatgcaggg
atagttttggcaattgctgacagattggacagccttgttggcttatttgctgctggttgt
caacctagttccgctaatgacccatttggcttgcgaagaatctcttatgctctagtccaa
atattggtggataatgataaaaatttggatttggttcgtgctttaagacttgctgctgac
gtgcaacccatcaaagcagatgtctcaatgattaatgatgtacatctatttgttactcga
agattggagcaattcctggttgacaagggaataaggccagaaattgttcgttctgttctt
gcagaacgtgcaagttccccttgtctggcagcgaagacagcatataaaatggaggctttg
tcaagagaaaatcttttccctaaggtagttgaagcatattctcgtccaacaagaattgtc
cgtggcaaggatgtggacactgatatgaaggtggatgaggctgcgtttgaaacagatgaa
gagagagctttatggagcactttcacgtccactaaaagcaaaatttatcctggcattgag
attgatgagtttgttgagatatcctcagagctactacagccgcttgaggatttcttcaat
aatgtttttgtcatggtggaagatgaaagaatcaggaagaacaggcttgctctgctaaat
aaaattgcagacctgcctagaggcatagcagatctttcagttttaccaggattttag
DBGET
integrated database retrieval system
