Populus trichocarpa (black cottonwood): 7486811
Help
Entry
7486811 CDS
T01077
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
7486811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7486811
Transcription factors [BR:
pop03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
7486811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
7486811
NCBI-ProteinID:
XP_024441064
LinkDB
All DBs
Position
14:7178922..7186261
Genome browser
AA seq
764 aa
AA seq
DB search
MEIFSSGEDLVIKTRKPYTITKQRERWTEEEHSRFLEALKLYGRAWQRIEEHIGTKTVVQ
IRSHAQKFFSKLEKEAVVKGVPIGQALDIDIPPPRPKRKPSNPYPRKIGVGPPASQVGAK
DGKLLTSASFPCCKQVLGLEKEPLPEKLNGDERPTNAKENQDDNCSEVFSLLQEPHCSSV
PSINKNSVPTLDILKKASPFREFVSSPKEGNHDASNQSSVTVELGANQKLDNSDVKQDNS
TSEFSKSENFCSFSEKLFQQKKSDDFIGALRTDGMQAMQNYPRHVPVHVLDGSLGTCMQT
PPSDFSFQESMFHPIGEIPACPNLYSHPAASKTTDHPNISPRSSMHQSFPSFPPPFTPTH
HNQDDYRSFLHISSTFSSLVVSSLLQNPAAHAAASFASTFWPYGNVESSADSPACAQGGF
QSRQLNSAPSMAAIVAATVAAATAWWTAHGLLPMCAPLHTSFACPPASATAIQSVDTGQV
SATKTERKETAENPSLQGQIQGPEHTEALQAQNSASKSPKITSSDSEESGGPKLNTGPEV
IDHELTTKPHEVQDSSKTKSRKLIDRSSCGSNTPSSSEIETDALEKAEKGTEEPKEDDAN
HPASESSSRHSRSSSSMNDSWKEVSEEGRLAFQALFAREVLPQSFSPPHDLKSKMHQNED
AGEKKDADEKDGDASLINLNSKTWECCSGHQEGEKNALSRCENYGEEELLTIGLGHGKLK
VRRTGFKPYKRCSLEAKESRTGTGSGQGEEKGPKRLRLEGEASV
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggaaatattctcttctggggaagacttggttattaagacaaggaaaccatatacaatt
accaagcaacgagaaagatggacagaggaggagcatagcaggttcctagaggccttgaag
ctctatggacgagcttggcagcgaattgaagaacatattggtacaaagactgtcgttcag
atcagaagtcatgcacagaagttcttttcaaagttggagaaggaggctgttgttaaaggt
gttccaataggacaagcacttgacattgacattccaccaccacgtcccaaaaggaaacca
agcaatccttatcctcgaaagataggcgtgggtcctcccgcatcacaggtgggagcaaag
gatggaaagcttttaacttcagcttcttttccgtgttgtaagcaggttttaggcttggag
aaagaaccacttcctgagaaacttaatggagatgagaggccaaccaatgctaaggaaaat
caggatgacaattgctcagaagtattttcccttctccaagaacctcactgttcttctgta
ccttcaatcaacaagaattctgtaccaacactagatattctcaaaaaggctagccctttc
agggagttcgtatcttcaccgaaggagggaaatcatgatgcaagtaatcaatcctctgtc
accgtcgagcttggagcaaatcaaaagttggacaactctgatgtcaaacaggataacagc
actagtgagttttcaaaatcagaaaacttttgctctttttctgagaaattgtttcagcaa
aagaaatcagatgattttattggagcattgcgaacagatgggatgcaagccatgcagaac
tatccaaggcatgtccctgtgcatgttctagatgggagcctgggaacatgtatgcaaact
cctccctcagatttttcgtttcaggaatccatgtttcatccaataggagaaattccagca
tgtcctaatttatattcacatcctgctgcatccaaaaccactgatcatccaaatatttca
ccgagatcctctatgcatcaatcatttccaagttttcctcctccctttaccccaactcat
cataatcaagatgactacagatctttcctccacatatcctccacattttcaagcctcgtt
gtatcttctctgctacaaaacccggcagcccatgctgcagcaagctttgcatctaccttt
tggccctatggaaatgtggagagttctgcggattctccagcatgtgcccaaggaggtttc
caatccaggcaattgaactctgctcctagtatggcagctattgttgctgctacagtggca
gcagcaaccgcatggtggacagcgcatggactacttcccatgtgtgcccctcttcatacc
tcgtttgcctgccctcctgcatctgcaactgcaattcagtctgtggatactggtcaagtt
tctgcaaccaagacagaaaggaaggaaacagctgaaaatccttctttgcagggacaaata
cagggcccagagcacactgaagcattgcaagctcaaaactcagcatctaaatcaccaaag
ataacatcatcagactctgaagagagcggaggcccaaagctaaatactggaccagaagtt
attgatcatgagttgactacaaaacctcacgaggtccaggattcaagcaaaacaaagagc
agaaaactgattgaccgttcttcatgtggttcaaacacaccttctagcagtgaaatagag
acagatgcattagagaaggctgagaaaggcacggaagagccaaaagaagatgatgcaaat
catccagcttccgaatctagctctcgccacagcagaagcagtagcagcatgaatgattca
tggaaagaggtctccgaagaggggcggctggcatttcaagcactcttcgctagagaggta
ttgccccagagcttctcacctccacatgatctgaagagtaagatgcaccagaatgaagat
gctggagaaaagaaagatgcagatgagaaagatggagatgcatcactgataaatctcaac
agtaaaacgtgggagtgctgctctggtcatcaagaaggggagaaaaatgctttgtctaga
tgtgaaaactatggggaggaggagctgctgacgattgggcttggacatggaaagcttaag
gttcgtcgaaccggatttaaaccttacaaaaggtgttcactggaggccaaagaaagcagg
accggaaccggcagcggccagggcgaggagaaaggccccaagaggttacgtttggaagga
gaagcttcagtttga
DBGET
integrated database retrieval system
