Populus trichocarpa (black cottonwood): 7486850
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Entry
7486850 CDS
T01077
Name
(RefSeq) protein argonaute 4A
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7486850
03036 Chromosome and associated proteins [BR:
pop03036
]
7486850
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
7486850
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
7486850
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
7486850
microRNA pathway
RISC loading complex
7486850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
7486850
NCBI-ProteinID:
XP_024462590
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All DBs
Position
8:508104..514625
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AA seq
913 aa
AA seq
DB search
MESSDSRKDLPPPPAIIPADVVKTELGPTCEQTKKAATPKRVPMARRGYGAKGQRIQLLT
NHFKVAVPKSNDHFYQYSVALFYEDGHPTDGKGIGRKVMDKVQETYDSELEGKQLAYDGE
KTLFTTGSLPHNKLEFTVVLEDVSLTRGGDNDSSRGNGSPSESDQKRRKRPYHSKTIKVQ
ISYATKIPVQAIAAVLQGQESEHFQEAVRVLDIVLRQNAARQGCLLVRQSFFHNNPRNFV
ELGGGVMGCRGFHSSFRAAQDGLSLNIDVSTTMIVKPGPVVDFLIMNQNVRDPYHIDWTK
AKRMLKNLRIKTNHSNTEYKITGLTEKSCREQTFSLNQRSGRDGDGEVQTIEVTVYDYFV
NHRNMGLQYSADFPCINVGKPKRPSYFPLELCNLVSLQRYTKALSSLQRASLVEKSRQKP
QERMRSLTDALRSSNYDADPMLRSSGISISAQFTQVEGRVLSAPRLKVGNGEDFFPRNGR
WNFNNKKLVDPVKIEKWAIVNFSARCDIRYLCNNLIKCGDMKGISISNPFEVFEESPQFR
RESAPVRVERMFEAIKSKLPGPPQFLLCILPERKNSDIYGPWKRKNLSDLGIVTQCIAPT
KVNDQYLTNVLLKINAKLGGMNSLLSIEHAPSIPLVSKLPTLILGMDVSHGSPGHSDVPS
IAAVVSSRHWPLISRYRASVRTQSQKVEMIANLFKPVAGTREDQGIIRESLLDFYSSSGK
RKPDQIIIFRDGVSESQFIQVLNIELEQIIEACKFLDENWCPKFMVIVAQKNHHTKFFQS
GSPDNVPPGTVIDNKVCHPRNNDFYMCAHAGMIGTTRPTHYHVLHDELGFSADDLQELVH
SLSYVYQRSTTAISVVAPICYAHLAASQMTQFIKFDDLSDTSSSHGGVTVPGAVPVPELP
RLHNNVSSSMFFC
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggagtcttcagattcacggaaagatttgccaccacctccggctataattcctgctgac
gtggtgaaaacagaattgggtccaacttgtgaacaaacaaagaaagcagcaaccccaaaa
cgagttcccatggctcgccgtggctacggagctaaaggacagagaatacaactactaact
aaccatttcaaagtggcagtgcccaagtcaaatgaccacttctaccaatacagtgttgct
ctattttatgaagatggccacccgaccgatggaaagggaatcggaagaaaggttatggac
aaagtccaggagacctatgattctgagctggaaggtaagcagcttgcttatgacggggag
aagaccctgtttacgactggttctcttccacacaacaagctggaattcactgttgtgttg
gaagatgtctccttaaccagaggtggagataacgacagttccaggggtaatggcagcccc
agtgaaagtgatcaaaagcgaaggaagcggccctaccactccaaaacgattaaagtacaa
atcagctacgcaactaaaattccagttcaagcaattgcagctgttctgcagggtcaagaa
tctgagcattttcaagaagctgtcagagttctagacattgtgctaagacagaatgcagca
aggcagggttgcctgttggtccgacagtcgtttttccataataatccaagaaacttcgtt
gagttgggaggtggtgtcatgggatgccgtggttttcattcaagttttcgagctgcccag
gatggcctatccctgaatattgatgtatcaaccaccatgatagttaaacctggaccagta
gtggacttcctaatcatgaatcagaatgttcgagatccttaccatattgactggacaaag
gctaagaggatgcttaaaaatttgaggattaaaactaatcactccaacactgagtacaaa
atcactggattgactgaaaaatcctgcagagagcaaactttctcgctaaaccaaagaagt
ggacgggacggggatggtgaagtgcaaactattgaggttacggtttatgattactttgtc
aatcatcgcaacatgggattgcagtattcagctgatttcccgtgcattaatgttgggaaa
ccaaagcgcccatcgtattttcctcttgagctgtgcaatctggtttcgttacaacgctac
accaaagcgttgtccagcctgcaaagggcttcccttgtggagaaatcacggcagaagccc
caagagcggatgagatctttgactgatgctttgagaagcagcaattatgatgctgatcca
atgcttcgttcttctggaatttcaattagtgctcagtttactcaagttgaaggtcgtgtt
ttatctgctcccaggttaaaagtgggaaatggagaggacttcttccctcgaaatgggaga
tggaatttcaacaacaagaaactagtggatccagtgaagattgaaaaatgggctatagta
aacttctctgcacgttgtgacatacgttatctgtgcaataacttgataaagtgtggagac
atgaaaggcattagcataagtaatccatttgaggtatttgaagagagtccccagtttagg
cgagaatctgctcctgtaagagtggagagaatgttcgaggccattaagtctaagcttcca
gggccgccacaatttctgttgtgtattcttccagagaggaagaactctgacatttatggt
ccatggaaaaggaaaaatctttctgatttagggatcgtcacacagtgcattgcacctaca
aaggtgaatgatcagtacctgacaaatgtgctactgaaaatcaatgccaagcttggtgga
atgaattccttgttatcaattgagcatgctccttctatacctttggtgtctaagcttccc
accttaatacttgggatggatgtatcacatggctctcctggtcattctgatgtgccatct
attgctgcggtggtaagttccaggcactggccattaatttctcgctacagagcttctgtt
cgcacccagtcacagaaggttgaaatgattgcaaatctattcaagcctgttgctggtact
cgtgaggatcagggcattatcagggagtcacttctggacttctactcgagctcaggaaaa
agaaagcctgatcagataattattttcagggatggagtgagcgagtcacagttcatccaa
gttctaaacattgaacttgaacaaattattgaggcctgcaagttcttggatgagaactgg
tgcccgaaattcatggtgattgttgcccagaaaaatcaccataccaagttcttccagtcg
ggatcacctgataatgttccacctggtactgtcattgacaacaaggtttgccatcccaga
aacaatgacttctacatgtgtgctcatgctgggatgattggaacgactcggcctactcat
taccatgttctacatgatgagcttggtttttctgcagatgatttacaagagcttgtgcac
tccttgtcatatgtgtatcagaggagcaccactgccatatctgtagttgctccaatttgc
tatgcccacttagctgcaagccagatgactcagtttatcaaattcgatgatttgtcagac
acatcttctagccatggtggggttactgttccaggtgctgttccagttccagaattacct
cgtctgcataataatgtcagcagttcgatgttcttctgttaa
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