Populus trichocarpa (black cottonwood): 7486858
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Entry
7486858 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7486858
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7486858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7486858
03019 Messenger RNA biogenesis [BR:
pop03019
]
7486858
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7486858
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
7486858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
PI-PLC-C1
Motif
Other DBs
NCBI-GeneID:
7486858
NCBI-ProteinID:
XP_052311424
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All DBs
Position
8:complement(622222..625555)
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AA seq
692 aa
AA seq
DB search
MKPFFNSRRPKHHKQKGNTAPLNQQVFSTNQSLANSMPMQPQLGLVNPQIPITFNNSNTL
LSNGQAMANMPPLIAQQPGILSGPNDLAILQLQNQVNKLNALKMLMDQVNQLQGELFGPS
FSNLPQQLNQNMGLLQNPMQNMMNPVMPLQMPINSQVGSFNVPSSNHQVVGAQSQNFFVN
PPFGAEQRVNPNQPNYVMPTTSAYGSKLLHVADQQVQGKWSASQQGQSFLMPTVGANGPN
VANQQVEGNSPALQQSEKVPMPAMAANGAKPLPIATQQGQGNSSASQQSWNSQPSTYNRW
QVTVFNLDDFFLSSYHLCNPVIMVCFMHFPCFSNLKNNRNRGRSQSGHQKSDFNCMDNGK
RKLEFSNEHGRKGNGNERVAKFGRTDLADQATEEKSKPSRTFFYTEQEIKQWRESRRKHY
PTKISIEKKQMEVIDREANFRHKQLKEILAKQAELGVEVAEIPPDYLLDSEKLGVEVAEI
PPPQVLNSEKLGVEVAEIPPPQVLNSEKLGVEVAEIPPRHLLDSEKQEHGREDNRRSLTK
KGKFWNKHDKRGRFNKKGRSAKQVGSANEERKPTLLEKLLSTDIKRDKRQLLQVFRFMVA
NSFFKDWPEKPLKFPSVVVKEDGYEDEIVEKKSSLVGEEVSEDRNNTIAENFGDRDDNIE
HDAQVELGNCFVRGKCDIVDEVDRVEEGEIVD
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctttcttcaattcccgtcgtcctaagcatcacaagcaaaagggcaacactgct
cctcttaatcaacaggttttttcaacaaaccaatctttagcaaattcaatgccaatgcaa
ccgcaactgggtttagtcaatcctcagattccaattactttcaataattcaaacaccctt
ttaagcaatggacaagccatggctaatatgccacctttgatcgctcaacaacctggtata
ttgagtggacctaatgatctggctatccttcagctacaaaatcaagtcaacaagttgaat
gctttaaagatgttgatggatcaagtaaaccaattgcaaggagagctgtttggtcctagt
ttctccaatttgccacaacaactcaatcaaaatatgggtttgttacaaaatccaatgcag
aatatgatgaaccctgttatgcctttgcaaatgccaataaattctcaagttggttccttt
aatgtcccttcaagcaatcaccaagtggtaggtgctcaaagtcagaacttttttgtaaat
ccaccgtttggagccgagcaacgagttaatccaaaccagcccaactatgtaatgccgaca
actagtgcatatggatcgaagctattgcatgttgcagatcagcaagtccaagggaaatgg
tctgcgtcacagcaaggtcagagctttttgatgcccacagtgggtgcaaatggaccaaat
gtcgcaaatcagcaagtggaagggaactcgcctgcattacagcaaagtgagaaagttcca
atgcctgcaatggctgcaaatggagcaaagccattgcctattgcaactcagcaagggcaa
gggaactcatctgcgtctcagcaaagttggaactcgcagccctctacatacaataggtgg
caggtaaccgtatttaacttggacgatttctttctgagttcatatcatttatgcaatcca
gtgatcatggtttgttttatgcactttccatgcttcagtaacttaaaaaacaatcgaaat
agagggcgatcacaatcaggacaccagaaatctgatttcaattgcatggataatggaaag
agaaagcttgagttttctaatgaacatggcagaaaagggaacggcaatgagagggtagca
aaatttggtcgcactgatcttgcagaccaagctacagaagagaaaagtaaacctagcaga
acttttttttacacggaacaagaaatcaaacaatggcgtgaatcacgtaggaagcactac
ccaacaaaaatcagcatcgagaagaagcagatggaggttattgatagagaggccaacttt
cgtcacaagcaactcaaggagattttggcaaagcaggctgagctaggagttgaagttgca
gaaataccgccagactatctgttagattcagagaagctaggagttgaagttgcagaaata
ccaccaccacaggtgttaaattcagagaaactaggagttgaggttgcagaaataccacca
ccacaggtgttaaattcagagaaactaggagttgaggttgcagaaataccaccacggcat
ctgttagattcagagaaacaagagcatggaagggaagataacagaaggtccttgactaag
aaagggaaattctggaacaagcatgataaaagaggaagatttaacaaaaaaggtcggtca
gccaagcaggttggatcagcaaatgaagaaaggaagccaacactattggagaagcttctg
agcacagatataaagagagataagcgccaattgttgcaggtttttaggttcatggtggcg
aactctttcttcaaggattggccagagaaacctttgaaatttccttcagtagtggtcaaa
gaagatggttatgaggatgagattgtagaaaaaaaatcctcacttgtcggggaggaagtt
tctgaagacaggaacaacacaatagctgaaaattttggtgatagagatgacaacatcgaa
catgatgctcaagtcgagctggggaattgttttgtcaggggaaaatgtgatattgttgac
gaagttgatagggttgaagagggagaaattgttgactaa
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