Populus trichocarpa (black cottonwood): 7486870
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Entry
7486870 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7486870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7486870
03012 Translation factors [BR:
pop03012
]
7486870
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7486870
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
7486870
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
7486870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
T2SSE
AAA_16
AAA_19
ABC_tran
PhoH
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
7486870
NCBI-ProteinID:
XP_002310975
UniProt:
B9HKJ5
LinkDB
All DBs
Position
8:700953..710378
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AA seq
1154 aa
AA seq
DB search
MQNSKLVLRSFLLGCSTTAKKKSFSYTIFSNKNNHPLFSLLLFLHNSNETSFLVTKRRGF
CGYAVEQFSDDEYECDFENHKASSSVANVDEWKWKLSLLLRSETDQEIVSRDRKDRRDYE
QISNLAGRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEH
LDRTQLSAGKVGGNADDASINQIEDTSPDENPDSFLDRSVMERVLQRRSLRMRNMQRAWR
ESLEGRKMMDFRKSLPSFQEKEKLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG
RGAFCSIICTQPRRISAMAVADRVSAERGEPLGEAVGYKVRLEGVKGRNTHLLFCTSGIL
LRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFS
NYFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLAPRKR
KNQITTLVEDALTNSSFDNYSSRARDSLARWMPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISCLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNVHKIVLATNM
AEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYH
LYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPKPLAVQNAIDF
LKMIGALDEKENLTNLGKYLTMLPVDPKLGKMLIMGAIFGCFGPILTIVSGLSVRDPFLL
PQDKKDLAGAAKSRFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQTLQAIH
SLRKQFNFILKDAGLIEEDTNNHNKLSHNQSLVRAIICSGLYPGIASVVHRETSMSFKTM
DDGQVSLYANSVNARYETIPYPWLVFGEKVKVNSVFIRDSTGVSDSVLILFGGALACGAQ
AGHLKMLNGYIDFFMDHNLAECFLKLNEELDKLIQKKLQDPKLDILKEGKYLMLAVEDLV
SGDQCEGKFVFGRESRKPKVTNDNDRFTKDGANPKSLLQTLLMRAGHSPPKYKTKHLKTN
EFRALVEFKGMQFVGKPKRNKQQAERDAAIEALAWLTHTSDNNQNEHDDSQPDVTDNMLK
LLGKRRRSKQRRPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcgaagcttgtgctaagaagtttccttctgggatgcagcaccaccgccaag
aagaagtcgttttcctataccatcttcagcaataaaaacaaccaccctttatttagtttg
cttttgtttctacataattctaatgaaaccagctttttagtgaccaaaaggcgtggtttt
tgtgggtatgcagtagagcagttctctgatgacgagtacgagtgtgattttgaaaaccac
aaggcttcgtcgtctgtggccaatgttgatgagtggaaatggaagctcagcttgctattg
cgcagtgaaacagaccaagagattgtttctagagatagaaaagacaggagagactatgag
cagatttcaaatcttgctggaaggatgggactttatagtgaactatatggaaaagtggtt
gttgcaagcaaggttcctctacctaactacaggcctgatttggatgataagcggccacaa
agggaggtggttatcccactaagtttgcaaaggagggttgagggtttacttcaggagcat
cttgatagaactcaactaagtgctggaaaagttggtggtaatgcagatgacgcgtccatc
aatcagattgaagatacgagtccagatgagaatccagattcatttctagaccgctctgtg
atggaaagggttcttcagaggaggagtttgcgaatgcgtaacatgcaaagagcttggcgg
gaatcacttgagggcagaaaaatgatggactttaggaaatctctaccttctttccaggaa
aaggagaagttactccaagcaatagcaaggaatcaggtcattgtaatatctggagagact
ggatgtgggaaaaccactcaacttcctcaatatattctggagtcagaaatagaatctggg
cgtggagcattctgtagcataatttgcactcagcctcgaagaatatctgctatggctgtt
gcagatagagtgtctgcggagagaggagagcctcttggtgaagcagttggttataaagtc
cgactagagggtgtgaaaggaagaaacacacatctgcttttttgtaccagtggaatttta
cttcgacgcctgttaagtgaccgcaacttgaatggcataacccatgttttcgtcgatgaa
attcatgagcgaggcatgaatgaagacttcctattgattgtgctcaaggatcttctttca
cgtcgtcgggacttgagattgattttaatgagtgccactttgaatgcggaactcttttcc
aattattttggaggagcaccaactattcatattccaggctttacatatccagtgagggca
cattttttagaagatgtactggaaatgaccggatataagttgacttctttcaatcaaatt
gatgattatggccaagagaaaatgtggaaaacacagaggcaactggcaccacgaaaaagg
aaaaaccagatcactactctcgttgaggatgctcttactaattcaagttttgacaattat
agttccagagcacgtgactctctggcacgctggatgcctgattgcataggatttaacctt
attgaagcagttttgtgccatatatgtcggaaggaacgaccaggtgctgtcttagttttc
atgactggctgggaggatattagctgtttgagggatcaacttaaagcacatcctctcctg
ggtgatcctaacagaattctgcttctaacttgccatggttctatggcaacctcagaacag
aaactgatttttgagaaacctcctcctaatgtacataaaatagttcttgcaaccaatatg
gcagaggcaagcattacaatcaatgatgtagtttttgtcattgattgtgggaaggcaaaa
gaaaccacttatgatgctttaaacaacacaccttgtctgctaccttcttggatatcaaaa
gcatctgctcgacaaagaaggggtagggctggccgagtgcagccaggcgaatgttaccac
ctatacccaagatgtgtatatgaagcctttgctgaatatcaacttcctgaacttttgagg
actcccctgaactctctttgcttgcaaataaagagtttgcaggttggaagcataggagaa
ttcttgtcagctgctctccagccaccaaaaccattggctgtccaaaatgcgattgatttt
ctgaagatgattggtgcattagatgagaaggagaatctgacaaatcttgggaagtatttg
acaatgcttccagtagatcccaagctgggtaaaatgttaataatgggtgccatctttggg
tgctttggtcctatattaacaatagtgtccgggctcagtgtcagggatcctttccttctg
ccacaggacaaaaaggatttagctggggcagcaaagtctagattttctgcaaaagactac
agtgatcatatggctcttgtccgtgcatatgaaggatggaaagaagctgaaagagaagga
tcggcatatgagtattgctggagaaatttcctgtctgcacaaactttgcaggccattcat
tctctaaggaagcaatttaacttcattttaaaagatgctggcttaatagaagaagataca
aacaaccacaacaaattaagtcacaaccaatcattggttcgtgcaattatatgctctggc
ctctatcctggaatcgcgtcagtagtgcacagagaaacatccatgtctttcaaaacaatg
gatgatggccaagtttctctatatgctaattctgtgaatgcacgctatgagacaattccc
tatccatggctggtctttggtgaaaaagtaaaggtcaactcagttttcatacgtgattcc
actggtgtatctgattccgtactgatcctttttggtggtgcacttgcttgtggagcacag
gctgggcatctgaaaatgttgaatggatacattgatttcttcatggatcataatttggca
gagtgctttttaaagcttaatgaagaacttgataagcttattcagaagaagcttcaagat
cctaaacttgacattctcaaggaaggaaaatacctcatgcttgctgttgaggacctggta
tcaggagatcaatgtgaaggaaaatttgtgtttggtcgtgaaagcaggaagcctaaggta
actaatgataatgacagatttacaaaagacggagcaaatccaaaaagtttgctacaaacc
ctactgatgagagctggacactcccctccaaaatacaagacaaagcaccttaagacgaat
gagtttagggcactggttgaattcaagggaatgcagtttgtggggaagcccaagagaaac
aagcaacaagcagagagggatgctgctattgaagcactggcctggttaacccatacatcc
gacaataatcaaaatgagcatgacgactcccaacctgatgtcactgataacatgctcaaa
cttcttgggaaacgtcgtagatcaaagcagcgtcgccctggttga
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integrated database retrieval system
