KEGG   Populus trichocarpa (black cottonwood): 7487005
Entry
7487005           CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    7487005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7487005
Enzymes [BR:pop01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     7487005
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     7487005
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 7487005
NCBI-ProteinID: XP_052312671
LinkDB
Position
1:2054050..2071543
AA seq 1796 aa
MQILKTIPAETRKKLGGKGYFPQDGYILQQLPVPPNCLSVPAVSDGISIMSSDLSISILK
KVLKQVEVIKSSRSGAPNFDAHKDEANSLQSMVDRCLQVRGTTKTSRDVDVRYGVKKDSS
ESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTKVNQVGIPYEIAQRITFEERVSVHNM
RYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIIDGDVVFINRPPTTHK
HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLL
SSHSGNLNLQLTTDSLLSLKMIFKACFLDKSAAQQLAMFVSPDLPQPALLKVNCIRPYWT
AHQILQMALPTCFNCSGERFLINNSNVLKVDFNRDVVASMINEILISIFFEKGSGAVLEF
FNALQPLLMENLFSEGFSVSLKDFSISQAVKQSIQESFKVISPLLCNLRSTYNELVELQV
ENHIQDVKKPVREFILTSSALGYLIDSKSDGAVAKLVQQIGFLGLQVSDRGKLYSKTLVE
DLASHFQSKYPTNLLNYPSAQYGLIQSSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPG
TLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKVGAESQSLFPAGEPVGVLAATAM
SNPAYKAVLDSTPSSNSSWDMMKEILLCKVGFKNDQADRRVILYFNYCGCGREHCQEKAA
FLVKNHLEKVSLKDVAKCFMIEYKNQQIPESFGSDAGLVGHVHLEKRILQELNISAQVIL
EKCQETVNSFRKKKKVGNLFKKTTLSISECCSFEQCTDELLCLMFFWQDANDVHLERTSN
ILADMICPVLLETTIKGDHRISCANIIWASQETTTWIRNPSRTQKGELALDIVLEKSVVK
QSGDAWRIVLDSCLPVLHLIDTTRSIPYAIKQVQELLGVSCAFDQAVQRLSKSVTMVAKG
VLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKAAEKCH
TDYLSSIVASCSWGKHVTVGTGSRFDVLWDTKEACLNPEGGIDAYSFLNMVRSTAGGEES
VTACLGAEVDDLILEDEDWNLSPEHHSSSDKPTFEDSAEFQDFLGNQPAESNWGKASSLK
DGSWSAGNWDVDKNDSAGKEKPWSLGMSSAETSDVGWDTAATRKINSSWNSENDVTQSNS
LSGWATKNSETHNGFATKVQEKPARSNDWDVGTAWGRKAGDDKFANVTKSWWGKVTDGDE
SEQNKNKQHQEDQELGTHGWDDKMSPDQLISGWASTTTQEATTESCSSKAASVWGTKNTN
VDEQGSENHVLLNQAKESSDWNKKSNSNQTDAACGSKAASSWGAKNTDADKRWGRKVDLN
QADTSCSWGRSKTPDRGWGLSNSGGSIGSEMENKTENQSLLDRGKESVGWGTKNTDADKP
WSNKVNSNQADTASGWGKSKSLDRRWGVSNSGGGNGNEMNNKTENQSQLEGGKESGGWGA
KNTDADKPWGNKVNSNQADTASCWGKPKSPDLGWGVSNSGGGNGSEMEDKTENQSLLDRG
KESGGWGKPKSISQGWGSSKDSVKAVDGWGVPNSAGSNGSERDQQWGQQSGEFKKNRTEG
SRGWGSNNGHWKKRNRPSKPHEDSSSSGLFTMTRQWLDIFTSQEQDILSDVEPLMLSIRR
IMHQTGYSDGDPLSADDQSYVLDNVFNYHPDKAVKMGAGINHVTVSRHSNFQESRCFYIV
STDDCKQDFSYRKCLENFIRGKYPDLADEFIGKYFARRGNRQRTPAPEGTEEKQAT
NT seq 5391 nt   +upstreamnt  +downstreamnt
atgcaaatcctgaagacaattcctgctgagactagaaaaaagctaggtggaaaaggttat
ttccctcaagatggttatatcctacagcagctacctgtccctccaaactgtctctctgtt
cctgctgtttcagatggcattagcatcatgtcttcagatctctctatatccatactcaag
aaagttctgaagcaagttgaagtcatcaaaagctcacggtcaggggcaccaaattttgat
gcacataaagacgaagcaaattcattgcaatcaatggttgaccggtgtcttcaagtcagg
ggtactacaaagacatcccgtgatgtagatgtccgttatggggtaaaaaaggattccagt
gaatcctcaaccaaagcttggcttgagaagatgaggaccctgttcataagaaaaggttct
ggattctcttcacgcagtgtcataactggagatgcgtacacaaaagtgaaccaagttggt
attccctatgagattgctcaaagaattacgtttgaggagagggtcagtgtgcacaacatg
aggtatctacaagagcttgtggataacaaattgtgcctgacatacagggatggttcttcc
acctattctcttagggaaggctccaaggggcatacatttctacgacctgggcaagttgta
cataggcggattatagatggcgatgttgttttcattaatagaccgccaacaacacacaaa
cattctttacaagcgctgtcagtgtatgttcatgatgatcatacggtgaagatcaatcct
ctgatatgtgggcccttaagtgctgattttgatggcgattgcgttcaccttttctacccc
cagtccctcgctgcaaaagctgaagtcttggagcttttctcagtggagaaacaattgctt
agctcccatagtggcaatctgaatttacagctgacaacagactcacttctgtcattaaag
atgattttcaaggcctgctttttggacaaatcagctgcacagcaactggcaatgtttgtc
tcacctgatttgccacaaccagctttgttgaaggtcaattgtattcgcccatactggact
gcccatcagattctccaaatggctttaccaacttgcttcaactgcagtggagagagattc
ttgatcaacaatagtaatgtcttgaaggttgatttcaacagggatgttgtggcatcaatg
attaatgagattctgatctcaattttcttcgagaagggttccggagcagtgcttgagttc
ttcaacgccttgcagcccttgctaatggaaaatctgttctccgaaggctttagtgttagt
ttgaaagatttctccatctcccaggcagtcaaacaaagtatccaagaaagtttcaaggtg
atttctcctttgctttgtaacttaagatccacctacaatgagctggttgagttgcaagta
gagaatcacatccaggatgtgaaaaagccagttcgagaatttattttaacttcctctgcc
ttgggttatttgattgactctaagagtgacggggctgttgctaagcttgttcagcaaatt
ggcttcttgggcttgcaagtttctgataggggaaaactttattctaagaccctggttgaa
gacttggcctcccattttcagagcaagtatcctaccaatttgcttaattatccttctgcc
cagtatggcttgattcaaagcagtttttttcatgggttggatgcgtatgaggagatggct
cattccatttctactagagaagtcattgtgcgttcatcaagagggttgtctgagccagga
acgttgttcaaaaacttaatggccatcctccgagatgtggtaatttgttatgatggcact
gtaagaaatgtctgcagcaattcaatcatccaatttgagtatggtgtgaaggtgggagct
gagtcccaaagtttattccctgctggtgaacctgttggcgtgttagctgccactgcaatg
tccaatcctgcatacaaagctgttcttgattctactccaagtagcaattcctcgtgggat
atgatgaaggaaatacttctttgcaaagttggtttcaagaatgaccaagctgatcgcagg
gtaattttatactttaattattgtggatgtggaagagagcattgccaagaaaaagcagca
tttttggtcaagaatcacttggaaaaagtcagtcttaaagacgttgccaagtgttttatg
attgaatacaagaatcaacaaataccagaaagttttggaagtgatgccggccttgttggt
catgttcatcttgagaagaggattttgcaagagttgaacattagtgctcaggtgattctt
gagaagtgccaagagactgtcaactcatttcgaaagaagaaaaaagttggtaatcttttt
aagaagacaacgttgtctatcagtgaatgttgctctttcgagcaatgcactgatgaattg
ctgtgcctgatgttcttttggcaagatgcaaatgatgttcatttggagaggacttcaaac
attcttgctgatatgatttgcccagttctgctggaaacaaccatcaaaggtgaccatcga
atttcctgtgcaaatataatttgggcaagtcaggagacaacaacttggataagaaaccct
tccaggactcaaaagggggagttggctttagatattgttctggagaaatctgttgtcaag
caaagtggtgatgcttggagaatagtcttggactcatgtcttcctgtccttcatttaatt
gacaccacacgttcaattccttatgcgattaaacaagttcaggaattgttgggagtttct
tgtgcatttgaccaagcagttcagcgcctctcaaaatcggtaaccatggtggcaaaaggt
gttctaaaagagcatctcattctacttgggaacagtatgacatgtgctggaagcttgatc
ggcttctatactgggggttataaaacattatctcgatcattggatatccaagtgccattt
accgaggccactctctttacaccgaggaaatgttttgagaaggctgcagagaagtgccac
actgattatttatcaagcatagttgcttcttgctcatggggcaagcatgttactgttgga
acaggttcacgctttgatgtcctctgggacacaaaagaggcatgtttgaatccagagggt
ggcatagatgcatacagttttctaaatatggtgagaagtactgctggtggagaagagtca
gttactgcttgtttgggtgccgaagttgatgatcttattctggaagatgaagactggaac
ctgtctcctgagcatcactctagttctgataagcctacctttgaagacagtgctgaattt
caagacttcttaggcaatcaacctgccgagtcaaactggggaaaggcttcatctttaaag
gatgggtcttggagcgctggaaattgggatgttgataaaaatgactctgcaggtaaggaa
aaaccttggagtttgggaatgagttcagctgagacaagtgatgttggctgggacactgca
gctaccaggaagataaattcctcctggaattcagagaatgacgtaacgcagtccaattcc
ttgtctggttgggcaacaaaaaattctgaaacccataatggcttcgcaactaaagtccaa
gaaaaacctgcaaggtccaatgattgggatgttggtactgcctgggggagaaaggctgga
gatgacaaatttgcaaatgtaactaagtcttggtgggggaaggtaacagatggtgatgaa
tctgaacaaaataaaaacaagcaacatcaggaagaccaagaattagggacacatggttgg
gatgataagatgtcaccggaccagttaatatctggttgggcttctacaactacccaagag
gctaccactgaatcctgcagttcgaaggctgcatctgtttgggggacaaagaataccaac
gttgatgaacagggaagtgagaatcatgttcttctgaaccaagctaaagagtcatctgat
tggaataaaaaaagcaattcaaatcagacagatgcagcatgtggttcaaaggctgcatcc
tcttggggggcaaaaaatacagatgctgataaacgttggggtaggaaggtggatttgaat
caggcagacacatcctgtagttgggggagatccaagacaccggatcgtggatgggggttg
tcaaattctggaggtagcattggaagtgaaatggagaacaagacagaaaatcaatctctg
ttggacagagggaaagagtcagttggttgggggacaaaaaatacagatgctgataaacct
tggagtaacaaggtgaattcgaatcaagcagacacagcctctggttgggggaaatccaag
tcactggatcgcagatggggagtgtcaaattctggaggtggcaatggaaatgaaatgaat
aacaagacagaaaatcaatctcagttggaaggaggaaaagagtcaggaggttggggggca
aaaaatacagatgctgataaaccttggggtaacaaggtgaattcgaatcaggcagacaca
gcctcttgttgggggaaacccaagtcaccggatcttggatggggggtgtcaaattctgga
ggtggcaatggaagtgaaatggaagacaagacagaaaatcaatctctgctggaccgaggg
aaagagtcaggtggttgggggaagcccaagtcaatttcacaaggctggggctcgtccaaa
gactcagttaaggcagttgatggatggggggtgccaaattctgcaggtagcaatggaagt
gaaagggatcagcaatggggtcagcagagtggagaattcaagaaaaaccgcacagaaggt
tctcgaggttggggatcaaataatggacattggaagaaaaggaaccgcccttctaaaccc
catgaggattctagttcaagtgggctatttaccatgactaggcagtggttagacatattc
acttctcaagagcaggatattctctctgatgttgagccattaatgctttctattagaaga
ataatgcatcaaacagggtacagtgatggggatccattatctgctgatgatcagtcctat
gtgcttgataatgtcttcaattatcatccagacaaagcagtgaagatgggtgctggaatt
aatcatgtcactgttagcaggcacagcaatttccaggagagcaggtgcttctacattgtc
tcaactgatgactgcaaacaagatttttcctaccgcaaatgtctggagaacttcatcagg
ggaaaatatcctgacttggcagatgaattcatcggaaagtattttgcaagaagaggcaat
cggcagcgcacccccgctccagagggaaccgaggagaaacaggccacgtga

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