Populus trichocarpa (black cottonwood): 7487214 Help Entry 7487214           CDS       T01077                                  Name (RefSeq) protein PIR   KO K05749   cytoplasmic FMR1 interacting protein Organism pop  Populus trichocarpa (black cottonwood) Brite KEGG Orthology (KO) [BR:pop00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pop03019]     7487214 Messenger RNA biogenesis [BR:pop03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      7487214    Factors involved in mRNA localization     Other mRNA localization factors      7487214 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  FragX_IP CYRIA-B_Rac1-bd WASH-4_N TBD Motif Other DBs NCBI-GeneID:  7487214 NCBI-ProteinID:  XP_024447266 LinkDB All DBs Position 19:3661112..3684608 Genome browser AA seq 1284 aa AA seqDB search MAVPVEEAIAALSTFSLEDEQAEVQGAGVLVSSERGATNSPIEYGDVSAYRLSLSEDTKA LNQLNALIQEGKEMASVLYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLREI QRWQASAASKLAADMQRFSRPERHINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDF SWYKRTFTQVSVQWQDIDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIV FAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPVI PAFPDLHLSPAAILKELSIYFQRFSAQTRLLTLPAPHELPPRDAQDYQRHYLIINHIGTI RAEHDDFTIRFASSLNQLLLLKSIDGADVDWCKEVKGNMYDMVVEGFQLLSRWTARIWEQ CAWKFSRPCKEAIPSESNGSSESFFDYEKVVRYNYSAEERKALVELVSYIKSVGSLMHRH DTLVVDALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTSKPE SDLQSHGGDESKGSFFYPRPVAPTATQVHCLQFLIYEVVSGGNHRKPGGLFGNSGSEIPV NDLKQLESFFYKLSFFLHILDYSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWML VDHVLESQNAGLLESVLMPFDIYNDSAQQALAALRQRFLYDEIEAEVDHCFDLFVSKLSE IIFTCYKSWAASEMLDPSFLFALDNGEKYSVQPMRFTALFKMTRVKLLGRTIDLRSLVSE RMNKVFRDNIEFLFDRFESQDLCAVVELEKLLEILKHAHGLLSKDISIDSFSLMLNEMQE NLSLVSFSSRLATQIWSEMQSDFLPNFVLCNTTQRFVRSSRVPLVPVQKPSVPHAKDNFY CGTQELNSAHQSFARLHSGFFGIPHMFSVVRLLGSRSLPWLIRALLDHITNKVTTLEPMI TGLQAALPKSIGLLPFDGGVTGCMRVVKENLNWGTKSELKAKVLRGIKEIGSVLYWMGLL DIVLREVDTMHFMQTAPWLGLFPGADGQILHSQDGGDSPVVNLFKSATAAIVSNPGCPNP TSFYTMSKQAEAADLLYKASMNTGSVLEYALAFTSAALDKYCSKWSAAPKTGFIDITTSK DFYRIYSGLQIGHLEDSVQVSSNNFEVLGDSVAWGGCTIIYLLGQQMHFELFDFSYQVLN IAEVEAGLLSQAHKNPHAAQGWETLLEAMKKARRLNNHVFSMLKARCPLEDKIACAIKQS GAPLHRIKFENTVSAFETLPQKGA NT seq 3855 nt NT seq  +upstreamnt  +downstreamnt atggcagttccagtcgaagaagccatagcagctctctctaccttctctcttgaagatgag caagcagaggtccaaggagctggggttttggtttcatccgaaagaggagcaaccaacagt cctattgagtatggtgatgtttctgcgtatcgtttatctctatcagaagacacaaaagct ctgaatcagctgaatgcacttatccaagaggggaaggagatggcatcggtgctttatacg tatagaagttgcgtcaaagcacttcctcagcttccagaatccatgaagcacagtcaggct gacttgtatctggagacgtatcaagttttggacttggagatgagtcgtttgcgtgaaatc cagagatggcaagcatcggctgcatcgaaactagcagctgatatgcagcggttttctagg cctgagcggcacattaatggccccacgataacccatctctggtccatgttgaagttgctt gatgttttagttcaacttgatcatcttaaaaatgccaaggcaagcatacctaatgacttc tcatggtacaagaggacattcacccaagttagtgttcagtggcaagacattgattctatg agggaggagttagatgatttacagatattcttaagcacaaggtgggcaatcttattgaac ttgcatgtcgagatgtttcgggtgaacaatgtagaagatattcttcaagttctgatagtc tttgctgttgagtcattggaattggattttgcgcttttatttcctgagagacacattctt ctacgtgttttacctgtccttgtcgtcttagcaacatcatcagaaaaagacagtgagtca ctgtacaagagggtaaaaataaacaggctgataaatattttcaagaacgatccagtcatt cctgcattccctgatcttcatctttctcctgctgcaatcttgaaagagttgtccatttac tttcaaaggttttctgcacaaactcgtcttctcacccttccagcacctcatgagctccca cctcgggacgcacaagattatcagaggcattatctcatcattaatcacattggaactatt cgtgccgagcatgatgatttcacaattcgttttgcttcatccttgaatcagctattatta ttgaagtcaatagatggtgcagatgttgattggtgcaaagaagtcaagggaaacatgtat gatatggttgttgaagggttccagctcttaagcagatggactgcacggatttgggaacaa tgtgcttggaaattttctcgcccatgcaaagaggcaattccttcagaatcaaatggatct tcagaatcgtttttcgactatgaaaaggtggtacgatataattacagtgctgaggagagg aaagcacttgttgagcttgttagttacataaaaagtgttggatcgctgatgcatcggcat gacacattggtagttgatgccttatgggaaacaatacatgctgaagtccaagattttgtc caaaacacattagccaccatgttgaggactacctttagaaagaagaaggacctgtcgagg attctttctgacatgcggacgctttcagcagactggatggcaaatacaagcaagcctgaa tctgatttacagtcacatggaggtgatgaaagcaaagggagcttcttttatccaaggcca gtggcacccacagccacgcaggtccattgcttgcagttcttgatatatgaagtggtgtct ggtggtaatcatcggaagcctggtgggctctttggcaacagtgggtctgagattcctgtg aacgatttaaagcaattggagagcttcttttacaagcttagcttcttcctacatatattg gactattcagcgactgtggcaactttgacagatcttggtttcttatggtttagagaattt tatttggagtcatctcgagttattcagtttcctattgaatgctctcttccttggatgctg gtggatcatgtgcttgagtcccagaatgcaggtcttcttgaaagtgttctgatgccattt gacatctacaatgattcagctcagcaagctctggctgcattaaggcagcgattcctctat gatgaaattgaggccgaggtggaccattgttttgatttatttgtttcaaaactctctgaa attattttcacttgttacaagagttgggcagcaagtgaaatgcttgatccttcattcctc tttgctttggacaatggagaaaagtattctgtacagcctatgagattcactgcactattt aagatgacgagagtaaagttacttgggaggaccattgatttaagaagcttggtttctgaa aggatgaacaaggttttcagagacaatattgagtttctttttgatcgttttgagtctcaa gatctatgtgcagtggtggaattagaaaaacttctggaaatattaaagcatgctcatgga ctgctttcaaaagatatttcaatagactcgttcagtctcatgttgaatgaaatgcaagaa aacttatctcttgtatcattttctagtcgacttgcaactcagatttggtcagagatgcaa agtgatttcctgccaaactttgtcttatgcaacactactcagcgttttgtccgatcatca agagttcctcttgttcctgtgcaaaagccatcagttccccatgcaaaggacaacttctat tgtggtactcaggagttgaattctgcgcatcaaagctttgctcgtttgcacagtgggttc tttggaattccccacatgttttctgttgttagacttctaggatccagatcgttgccttgg cttatccgagccctgttagatcatataacaaataaggtaactacacttgaaccaatgatt actggattgcaagcagcgttgccaaaatctattggactgctcccttttgatggaggagtc acaggctgtatgagggttgtcaaagaaaatcttaactggggaactaaatcagagctcaaa gcaaaggttcttcgagggattaaagagattggcagtgtgttatattggatggggcttctt gacattgtattgagggaagttgataccatgcatttcatgcaaactgccccttggttgggc ttgtttcctggcgcagatggccaaatattgcattcacaggatggtggggatagtcctgtt gtcaatcttttcaaatcagccactgctgcaatagtgtctaaccctggttgtccaaatcca acatctttttataccatgtcaaaacaggcagaagctgcagatcttctttacaaagctagc atgaatactggaagtgtgctggaatatgcccttgcttttaccagtgctgcattggataaa tattgcagtaaatggagtgctgctcccaagacaggcttcattgacataacaacctcaaag gacttttaccgtatatatagtggccttcaaattggacacctggaggattctgttcaagta tcatcgaataattttgaagtcttgggtgactcagttgcatggggtggctgtaccataatc tacttgcttggacagcagatgcattttgaactctttgatttttcatatcaagtcctcaat attgcagaagtggaggctggattgcttagccaagcacataagaatcctcatgctgcccag ggatgggaaaccctattagaagccatgaagaaagcaagaaggttgaacaatcatgttttc tcgatgctgaaagcccgttgcccccttgaagacaagatagcgtgtgctatcaagcaaagt ggtgctcctctgcatcggattaagttcgagaacactgtttcagcatttgaaacattgcct caaaaaggtgcctga

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