Populus trichocarpa (black cottonwood): 7487225
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Entry
7487225 CDS
T01077
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
7487225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
7487225
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
7487225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
EIF3I
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_LRRK2
VID27
WD40_like
Beta-prop_SCAP
Cytochrom_D1
RMC1_N
Beta-prop_IP5PC_F
VPS8_N
Motif
Other DBs
NCBI-GeneID:
7487225
NCBI-ProteinID:
XP_002308129
UniProt:
B9HBB5
LinkDB
All DBs
Position
6:5863395..5870812
Genome browser
AA seq
910 aa
AA seq
DB search
MGIFEPFRAIGYITTGVPFSVQRLGTETFVTVSVGKAFQVYNCAKLTLVIVSPQLPHKIR
ALACYRDFTFVAYATHIAVFKRAHQVTLWSRHSAKVNSLMVFGDYVISVDVDGNLFIWGF
KGLDESNVPVGHILFGDKFTPTCMMHPDTYLNKVLIGSQEGGLQLWNVSTKKMLYEFKGW
GSSVTSCVSSPALDVVAVGCVDGKIHVHNIRYDEEVVTFVHSMRGAVTSLSFSTDGQPLL
ASGGSSGVISIWNLEKRKLQSVVREAHDSSIISLHFLANEPVLMSSSADNSIKIWIFDTT
DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR
AKKLRVKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVIGEHILRPC
PENLTPVKACTISACGNFAILGTAGGWIERFNLQSGISRGSYMDVSERGSCAHESEVVGV
ACDSTNTQMISAGYHGDVKVWDFKGRALKSRWEVGCSLVKIVYHRLNGLLATVADDFVIR
LFDAVALRMVRKFEGHADRITDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDAVHVDVS
ITALSLSPNMDVLATTHVDQNGVYLWVNQSMFSGASNIDSYASGKEVVNVKLPSLSSVEG
SNVENEDTEKPIVNQSVSNEVSTFPAFSQQIPDLVTLSLLPKSQWQSLINLDIIKVRNKP
IEPPKKPEKAPFFLPSVPSLSGEILFKPSEPVDGEDTKPDKAESDKRKLGIPETQFLELL
QSSSEMKNFSAFTEYIKGLSPSNLDMELRMFQIIDEDEDEEELVKRPEFISIELLLDYFI
HEISCRNNFEFVQAVTRLFLKIHGETIRCNSKLQDKARKLLDTQSAVWQRVDKLFQSARC
MVTFLSNSQF
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgggtatcttcgaaccattcagagccatcggatacataacaaccggcgtgccgttttcc
gtccaaagattgggcactgaaacctttgtcacagtcagtgtaggcaaagcttttcaagtt
tacaattgtgcaaagctcactttagtcatcgtcagtcctcaactccctcacaaaatacgc
gctttagcttgctatcgtgacttcaccttcgtcgcctacgcaacccacatcgccgtcttc
aaacgcgcccatcaagtgacgttgtggagtaggcatagtgcgaaggtgaattcgttgatg
gtatttggggattatgtgataagtgttgatgttgatggcaatttgtttatttggggtttt
aaagggcttgatgagagtaatgtgccggttgggcatattctgtttggggataaatttacg
ccaacttgtatgatgcatccggatacttatttgaataaggttttgattgggagtcaggag
gggggtttacagctttggaatgttagtacaaagaaaatgttgtatgagtttaaagggtgg
ggttcgtcagtgactagttgtgtgtcctcgcctgcgttggatgttgttgcggttggctgt
gtagatgggaagattcatgtgcataatattcgttatgatgaggaggtggttacgtttgtg
cattctatgcgtggtgctgtgacctcattgtctttcagtacagatggacaaccactttta
gcgtcaggaggttcatctggtgttataagcatatggaatctggagaaaagaaaactacaa
tcagttgttagagaggctcatgatagttcgataatttcattgcactttttagctaatgaa
cctgtgctgatgagttcatcagcagacaactctattaaaatttggatttttgacacaact
gatggagatcctcgacttttacgttttcgaagtggacacagtgctcccccactttgcata
aggttctatgcaaatgggagacacattctatctgctggtcaggatcgtgcctttcgtctt
ttctctgtcatacaggaccaacaaagtagagagctctctcagcgtcatgtatccaaacga
gccaagaaacttcgggtaaaggaggaagaactgaaattgaagcctgtcattgcctttgat
tgtgctgaaattcgggagcgggattggtgcaatgtggtaacttgtcatatggatactgca
caagcatatgtgtggaggcttcaaaattttgtcattggggagcatatcctgagaccatgc
ccagaaaatctaacacctgttaaggcctgcaccattagtgcatgtggcaactttgcaatc
ctaggaactgcgggtggctggatagagcgattcaaccttcaatcaggaattagccgagga
agttacatggatgtgtcagagagaggaagttgtgcccatgagagtgaagtggttggagtt
gcttgtgattccacaaatacccaaatgataagtgcaggatatcatggggatgtaaaggtt
tgggatttcaagggacgtgcattaaaatccagatgggaagttggttgttctctggttaag
attgtttatcatcgacttaacggtctgttggctactgtggcagatgattttgttatccgt
ttgtttgatgccgtggcactgagaatggttcgtaaatttgaaggtcatgcagaccgtatt
acagatttatgtttcagtgaggatgggaaatggcttttgtcatccagtatggatgggacc
cttagaatttgggatgtcatcttagcaagacaaatagatgcagtgcatgttgatgtttct
atcacagcattgtctttgtcaccaaatatggatgtgctggcaactacccatgtcgatcaa
aatggggtctatttatgggttaatcagtcaatgttctctggagcttcaaacattgattct
tatgcaagtgggaaagaagttgtgaacgtaaagttaccatctctatcttcagttgaaggt
tcaaatgttgagaatgaggacaccgagaagcctattgtgaaccagtcagtctcaaatgaa
gtttcaacttttccggctttcagtcagcaaattccagatcttgttactctctcactgttg
cctaaaagccaatggcagagtttgatcaacttagacattataaaggtgcgcaataaacca
attgagcctccaaagaaacctgagaaggctcctttcttcttgccttcagttccatctctt
tctggagaaatattatttaaacccagtgagcctgtggatggggaggataccaaacctgac
aaagcagagagtgataagagaaaactaggcattccagaaactcaatttttggagcttctt
cagtcttcatctgaaatgaaaaatttttcagcgttcactgaatatatcaaaggtttatct
ccttcaaatttggatatggaacttagaatgtttcagataatagatgaggatgaggatgag
gaagaactcgtaaagagacctgagtttatttcaatcgagctgcttcttgactatttcatt
catgaaatatcctgcagaaacaattttgagtttgtacaggccgtcacaagattatttttg
aagatacatggtgaaacaattaggtgcaattcaaaattacaggacaaggcaaggaagctc
ttagacactcagagtgcagtttggcagagagtagataaattgttccaaagtgctagatgc
atggtcactttcctcagcaattcacagttttaa
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