Populus trichocarpa (black cottonwood): 7487514
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Entry
7487514 CDS
T01077
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7487514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7487514
03019 Messenger RNA biogenesis [BR:
pop03019
]
7487514
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7487514
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
7487514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
PL48
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
7487514
NCBI-ProteinID:
XP_024445061
LinkDB
All DBs
Position
1:complement(37308945..37325438)
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AA seq
688 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDSGPANPIASIPAIPSDNYGAATAAAPNTTNTTTNTTNNSNSGA
ADIQAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVVQKIQQLNSYNGVTSNKNFQ
QRNAGFSQQIEKSPNTIIKPSGTESANVQQQQQQQQQTQTPHLTNGQHQQPQQPNPLNRI
ATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEIKLNEALDSADNVILIFSVNRT
RHFQGCAKMASKIGASVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPFNEN
LPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAEAKREEEKEKGVNPDSGGENP
DIVPFEDNEEEEEEESEEEEESFGQPLGPAAQGRGRGRGMMWPSHNPMARGARPIPGIRG
FPPMMMGADGFSYGAVTPDSFGMPDLFGVASRGFPPYGPRFSGDFTGAASGMMFPGRPSQ
PGAVFPAGGFGMMMGPGRPPFIGGMGPTPSNLLRGPRPGGMFAPFPAPSSQNNSRSVKRD
QRAAANDRNDRHSAESDVVRGAAGESNDERKYMQETLKASHEDQFGAVNSIRNDESESED
EAPRRSRHGEGKKKRRGSGDDATPGSEH
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcagagggagttctaagcttcgacttcgagggcggcctcgattcgggcccc
gccaaccccatcgcctccatcccagcgattccatccgacaattacggcgccgcaaccgca
gctgcccccaacaccacaaacacaaccaccaacactaccaacaacagcaactctggtgcg
gcggacatccaggcgggtcgacggagcttccggcagactgtatgtcggcactggcttcga
agcctttgcatgaaaggcgacgcctgcggtttccttcaccaatatgacaagtctagaatg
cctgtatgtcggttttttagactttatggagagtgcagggagcaagattgcgtttacaag
cacaccaatgaggatatcaaggagtgcaatatgtacaagttggggttttgtccgaatggt
ccagactgcaggtataggcatgccaagttgcctggacctccacctcctgtagaagaagtt
gttcaaaagattcagcaactgaattcttacaatggtgtgacctctaacaaaaattttcaa
caacgaaatgctggtttttctcaacaaatagaaaaatctcccaataccatcataaaacca
tcaggaacggagtcggctaacgtgcaacaacaacaacaacaacaacaacagacccagaca
ccacatcttacaaatggccagcaccagcaaccccaacagcctaatcctttgaacagaatt
gcaacgcctttacctcaaggaatatctaggtactttattgttaagagttgcaaccgtgaa
aatttggagttatctgtgcagcaaggagtatgggcaactcaaaggagcaatgaaattaaa
ctgaatgaagctttagactctgctgacaacgtgattttgatattctcagtaaaccggact
cgacatttccagggttgtgcaaagatggcatccaaaattggtgcttctgttggtgggggg
aattggaaatatgcacatggaactgcgcattatgggaggaatttctcagtcaaatggttg
aagttgtgtgaactgtccttccacaaaactcgccacttgagaaacccattcaatgagaac
ttgccggtgaagattagtagagattgtcaagagctagaaccctctattggcgagcagttg
gcgtccttactttatctggagccagatagcgaacttatggcagtctcacttgcagcagaa
gcaaaacgagaagaggaaaaggaaaagggagtcaatcctgacagtggtggtgagaaccct
gacattgtcccctttgaggacaatgaagaagaggaagaagaagaaagtgaagaggaggag
gagtcctttgggcagcctcttggaccagcagctcaaggcagggggagaggtagaggaatg
atgtggccttctcacaatccaatggcccgtggggctagacccatccctggcatcagaggt
ttcccccccatgatgatgggtgctgacgggttttcttatggagctgttacacccgatagc
tttggaatgccagatctctttggtgtggcatcccgtggattccccccatatggtccgagg
ttttctggtgattttactggtgctgcatctggtatgatgtttcctgggcggccttcccaa
ccgggggctgtgtttccagctggtggatttgggatgatgatgggtccaggacgtcctccc
tttattggggggatgggtcccactccatcaaatcttctccgaggtcctcggccaggtggc
atgtttgcaccgtttcctgcgccatcctcccagaacaacagccggtctgttaagagagac
cagagggcggccgcaaatgatcgaaatgacaggcatagtgcagaatcagatgtggtcagg
ggtgcagctggggaatcaaatgacgagagaaaatacatgcaggaaacattaaaggcttcc
catgaagatcaatttggtgctgtaaatagcatcagaaatgatgagagtgaaagtgaggac
gaggcaccaagacggtcaaggcatggggagggaaagaagaagcgccgaggttccggagat
gatgctactcctggctctgagcactaa
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integrated database retrieval system
