Populus trichocarpa (black cottonwood): 7487521
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Entry
7487521 CDS
T01077
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7487521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7487521
03036 Chromosome and associated proteins [BR:
pop03036
]
7487521
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7487521
Coactivators
SAGA/TFTC/STAGA complex
7487521
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
7487521
STAGA complex
7487521
TFTC complex
7487521
SAGA complex
7487521
SLIK complex
7487521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
TAF4
Pyr_redox_3
Motif
Other DBs
NCBI-GeneID:
7487521
NCBI-ProteinID:
XP_024467564
LinkDB
All DBs
Position
1:37583081..37588797
Genome browser
AA seq
547 aa
AA seq
DB search
MSSSIVAKEAIEVIAQGIGITNLSPDVSLTLAPDVEYRLREIIQEAIKCMRHSRRTALTA
HDVDTALILRNVEPIYGFGSGGDKVPLRFKRAAAAGHKDLYYIDDKDVNFKHVIEAPPPK
PPLDTSLTSHWLAIEGVQPAIPENVPIEALGVISDGKKSDYKDDGLSIDVKLPVKDILSR
ELQLYFEKVTELTARRSESAIFKQALVSLATDSGLHPLVPYFIQFIADEVSRNLNNFSLL
LAVMRIARSLLQNPYIHIEPYLHQLMPSIITCLVAKRLGNRFSDNHWELRNFTANLVASI
CKRFGHAYHNLQPRIIRTLVHAFLDPTKSLPQHYGSIQGLAALGPSVVRLLILPNLEPYL
LLLEQEMLLEKQKNEIKRHEAWQVYGALTRAAGLCMYDRLKMLPGLFIPPSRAIWKSNGR
VMTAMPNKRKASTDNLMQQPLLKKIATDSAIGAMPMNSMPVEMQGAASGFPTAVGASSVS
VSAISRQLSNENVPRREISGRGLKTSTVLAQAWKEDMDAGHLLASLFELFSESMFSFTPK
PELSFFL
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagcatagtagcaaaggaagcaatagaggtgatagcacagggcatcggaatc
acgaatctgtcccctgatgtttccctcactctggctcccgacgtggagtaccgtctccgg
gagatcatccaggaggcaattaaatgcatgcgtcactcaaggagaactgccttgactgct
catgatgttgacactgctctcatcttaagaaatgtcgagccaatttatggttttggttct
ggaggagataaagttccattgcggttcaaaagagctgctgctgctggacataaggatcta
tattatatcgatgacaaagacgtcaattttaaacacgttattgaagcccctccgccaaaa
cccccgcttgatacttctcttacctcacattggttagctattgaaggtgttcagcctgca
attcccgagaatgttccgattgaagcacttggagtaatctctgatggcaaaaaatctgac
tacaaggatgatggtctttcgatcgatgtcaaactacctgtcaaggacatattgtcaaga
gagcttcagctttactttgaaaaggtcacagagcttactgcgaggaggtctgaatctgct
atcttcaaacaagcattagtgagtttggccacagactcaggactgcaccctttagttcct
tatttcatacaattcattgctgacgaggtttcaaggaatctgaataatttttctcttctc
cttgctgtgatgcgcattgcccgaagccttcttcaaaacccatacattcatattgaacct
tatctacaccaattaatgccatctattattacctgcctagttgcaaaaagattaggtaac
agattttctgacaaccattgggaactcagaaacttcacagcgaacctggttgcttcgata
tgcaaaagatttgggcatgcttatcacaatctgcagcctcgcatcataaggactctagtc
catgcgttcttggacccaacaaaatcattgccacaacattatggttcaatacaaggatta
gcagctctaggacccagtgtggttcgtcttcttatactaccaaatctagagccgtattta
ctcctccttgaacaagaaatgctgcttgagaagcaaaaaaatgagataaagagacatgaa
gcttggcaggtttatggagctttgacgcgtgcagctggtctctgtatgtatgatcggctc
aaaatgttacctggtttgtttattccaccaagtcgtgctatctggaagagcaatggaaga
gttatgactgcaatgccaaataaacgcaaagctagcacagataacttaatgcagcaacca
ctgcttaagaaaatagcaacagatagtgcaattggtgcaatgccaatgaactccatgcca
gttgagatgcaaggggcagcaagtggatttcctacagctgttggagcttccagtgtgtca
gtatcagcaatatctcggcagttatccaatgaaaacgtgccacgaagagagattagtgga
agggggttaaaaacgtcaactgttctcgcacaggcttggaaggaggacatggatgcaggc
catttattagcgtcactatttgaacttttcagtgaaagcatgttctcctttactcccaaa
cctgagttgtcttttttcttgtga
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