Populus trichocarpa (black cottonwood): 7487549
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Entry
7487549 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7487549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7487549
Enzymes [BR:
pop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
7487549
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
7487549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
7487549
NCBI-ProteinID:
XP_052306692
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All DBs
Position
1:complement(38508385..38512576)
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AA seq
707 aa
AA seq
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MFCFSSTPLSTLKPLKNKNPCDLHRPSKPNQTMRMRKHQWLRTALSRAYYCTFSSSFPLK
HVTQSNFETAVADLKTHLKAADFVAIDLEMTGVTSAPWRESLEFDRFDVKYLKVKDSAEK
FAVVQLGVCPFRWDPLRLSFIAHPHNFFIFPRQEVPIDSSSYEFLCQTTSIDFLAKYHFD
FNVCIRQGVSYLSRGQEDEALRLLNLRYENELSEQARDVPLVSITDILFSERMKNRLREW
RDGLLKDTSGGSQLEGSFLNDSNQQFQNIFYKMRPALSLNGFTSHQLRLIQSVTKKHFKD
LASVRVEGESSCSQQLVVYTDSESDRDLLKKEVMDDYRRQAEMKIKAAIGFRHVIDLLSS
EKKLIVGHNCFLDLAHIHSKFLGPLPLEAEEFVYSVNKCFPYIIDTKILLNTNNILKQRM
KKSKTSLSSAFLSLCPQIAFASKESCNLTFSSSVKVEVQVDDIRSSSWISGVKHEAGYDA
FMTGCVFAQACNLLGIDFKLYSPSENLACNERLQKHANLLYLSWINGDIIDLSTGHRTAE
SLRCRDLKKSQTGILFENIVLIWGFPSKLKTAVIKDRISKVFGPTSVTSICRLDETAVFV
QFSKLKLVADFLVVKETLERSNDAFSVLHPLSTILXGGNTCAASYETYKDICSSPTSKLL
FADQAEAVGIRWKTKLVERKEELETEEQDNFHEENAANTISVYVEQN
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgttttgtttctcctccacaccactatccacacttaaacccttgaaaaacaaaaaccct
tgtgacctacacagaccaagcaaaccaaaccaaacaatgagaatgagaaagcatcaatgg
ctaaggacggcactctcacgtgcgtactactgcaccttctcctcttcgttccctctaaag
cacgtgacccaatcaaacttcgagaccgcagtcgctgacctgaaaacccacctgaaagcc
gccgatttcgtggccatcgacttggaaatgaccggagtcacaagcgctccatggcgcgag
tccttggagtttgaccgcttcgatgtcaagtaccttaaagttaaagattctgccgagaaa
tttgctgttgttcagttgggtgtttgcccctttcgttgggaccctcttcgtctctccttc
attgctcacccgcataatttctttatatttccgcgtcaagaggttccaattgattcttcc
tcgtatgagttcctttgccagacgacgtccatagatttcttggctaaatatcattttgat
ttcaatgtctgcattcgccaaggagtgtcttatttatctagagggcaagaagatgaagcg
ttaaggctcttgaatttgcgatatgagaatgagttatcagaacaagctagagatgtgcca
ttggtcagcattacggatatcctgttcagtgaaagaatgaagaataggttgagagaatgg
cgtgatgggttgttgaaagatactagcggggggtctcagttggaagggtcatttttaaat
gactcgaatcaacaatttcagaacattttttacaagatgcgtccagctctttctctgaat
gggttcacttcccatcagcttaggttgattcaatcggtcacaaagaagcattttaaagat
cttgcttctgttcgtgttgaaggtgaaagttcttgttcccagcagctagttgtgtatacg
gactcagagagtgatagggacttgcttaagaaagaagtaatggatgactatcgtagacaa
gcagagatgaagatcaaagctgcaattgggtttcgacatgttattgacctcctttcctct
gaaaagaagttgattgtcggtcacaattgcttcttggatttagcacatatacacagcaaa
ttcttgggtcctcttccgttggaagctgaagaatttgtctactctgttaacaaatgtttt
ccatacatcattgacactaaaatactcttgaatactaacaatatactcaagcaaaggatg
aagaaatcaaagacatcactctcctcggcctttttatcactttgtccacaaattgctttt
gcttcgaaggaaagttgtaatctgacttttagctcatctgttaaagtggaggttcaagtg
gatgatataaggtcttccagctggatttctggagtcaaacatgaagctggatatgatgca
ttcatgactgggtgtgtctttgcccaggcttgcaatcttctaggcattgattttaaactt
tattcgccatctgagaatttggcttgtaatgagaggctccagaagcatgctaaccttcta
tatctcagttggattaatggagacattattgatttaagcaccggacatagaactgcagag
tctttgagatgcagagacctaaagaagtcgcagacagggattctgtttgagaacattgtt
ttaatctggggatttccatctaaactcaagacagctgtgataaaagatcgcatctccaaa
gtatttggcccaacatctgttacatcaatatgtcgtctggatgaaactgcagttttcgtg
caattcagtaaattaaaattggtcgctgattttctagttgtgaaagaaaccctggagaga
agtaatgatgcattctctgttttgcatcctctgtcaacaatattgngaggaggaaatact
tgtgctgctagttatgaaacttataaagatatctgcagttcacctacatcgaaacttctc
tttgcagatcaggcagaggcagttggtatcagatggaagaccaagttggtagaaagaaag
gaagagttagaaaccgaagagcaagacaattttcacgaagaaaatgcagcaaatactata
tcagtttatgtggaacagaactag
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