KEGG   Populus trichocarpa (black cottonwood): 7487702
Entry
7487702           CDS       T01077                                 
Name
(RefSeq) cell division cycle 5-like protein
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7487702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7487702
   03400 DNA repair and recombination proteins [BR:pop03400]
    7487702
Spliceosome [BR:pop03041]
 Complex B
  Other components
   Prp19 complex
    7487702
 Complex C
   Prp19-CDC5 complex
    7487702
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    7487702
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6 TPR_HPS5_insect
Other DBs
NCBI-GeneID: 7487702
NCBI-ProteinID: XP_024439015
LinkDB
Position
13:3263455..3270501
AA seq 1070 aa
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT
EWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYDPGDDPR
KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARR
LASLQKRRELKAAGIDNRHRRRKRKGIDYNSEIPFEKRPPPGFYDVADEDRPVEQPKFPT
TIEEIEGKKRMDIEAQLRKQDAAKNKIAERQDAPSAILQANKLNDPETVRKRSKLMLPAP
QISDHELEDIAKMGYASDLLAGSEELMEGSGATRALLANYAQTPRQGMTPLRTPQRTPAG
KGDAIMMEAENLARLRESQTPLLGGENPDLHPSDFSGVTPKKREIQTPNPMLTPSATPGG
VGLTPRIGMTPSRDSFGITPKGTPIRDELHINEDMDIHDTEKLEQRRQADLRRNLRSGLG
NLPQPKNEYQIVIQLPPEDNEEPEEKIEEDMSDRIAREKAAEEARLQALLRKRSKVLQRE
LPRPPTASLELIRDSLLRADGDKSSFVPPTSIEQADEMIRKELLALLEHDNAKYPLEEKP
SKEKKKGSKHPSKRSAASIPMIEDFEEDELKQADNLIKVEAQYIRVAMGHEDESLDEFIE
AHKTCINDLMYFPTRNAYGLSSVAGNMEKLAALQNEFEIVKTRLEAEREKALRLEKKVNV
LTQGYQIRAERQLLPPIEVTLKQMDTAGTELECFQALQRQEQLAASHRINGLWEEVQKQK
ELEQTLQRRYGDLVAELERIQQLIINYRALAIQQEEIAAKNRALELAQATAKQAAILNTE
LSEPMPSDELGSSLPVGSSDEKASDQQMDIDSEKVHSARATDTSLTNNVPSDPMPSDELG
SSLPVGSSDEKVSDQQMDVDSEKVHSARATDTSFTNNVPSDEVRTTLVQGSGHEASGTCP
SGSDINNQNGVPVPTGDSINRGDIISKVAVAVENKVNNDSVGVDAGDAVIITEVMKDSSA
AIEGESIQERVDGFATADVMQVSSGGDDKVNQLKDEGKLPVIVVDLTSSE
NT seq 3213 nt   +upstreamnt  +downstreamnt
atgaggatcatgataaaaggtggagtatggaagaacacggaggatgaaattctaaaagcg
gctgttatgaaatatggcaaaaaccaatgggctcgtatttcttctcttcttgttcgtaaa
tctgctaagcaatgtaaagctcgttggtatgagtggcttgatccttccattaaaaagacc
gagtggactagagaagaggatgagaaattgcttcatcttgctaagctcatgcccacgcag
tggaggacgattgccccgattgttggacgtactccttcacaatgccttgagcgttacgag
aagctgcttgatgcagcttgtgttaaggacgacaactatgatcctggtgatgatccacgg
aagttgcgtcctggtgagattgatccgaacccagaatctaagcctgcacgtccggatcct
gttgatatggatgaggatgagaaggagatgctttcggaagcacgagctaggttagcaaat
acgaaaggtaaaaaggctaaaagaaaggctagggagaaacagcttgaagaagcgaggagg
cttgcttccttgcagaaaaggagggaactgaaggctgctggtattgataataggcatcgg
agaaggaaaaggaaggggatagactataattctgaaattccctttgagaagagacctcct
cctggattttatgatgttgctgacgaagatagacctgtggaacagcctaagttcccgacc
actattgaagaaattgaagggaaaaaaaggatggatattgaagcacagttaagaaagcag
gatgctgcaaagaataaaattgctgaaaggcaagatgccccatcagctattctacaagca
aacaagctgaatgatccagaaacggttaggaagaggtcaaaattgatgcttcctgcacca
cagatttcagatcatgaattggaggacattgcgaagatggggtatgctagtgatcttctt
gcaggaagcgaggaactcatggaagggagcggtgcaacacgtgctcttttagcaaactat
gcccaaacaccacggcaaggaatgacacctctacgaacccctcaaagaactcctgctggt
aaaggtgacgctataatgatggaagctgaaaacctagcacggttgagggagtcacaaaca
ccattattaggaggagagaatcctgatttgcacccttcagatttttctggagttacccct
aagaaacgggagattcagacgccaaacccaatgctgactccttctgcaactcctggcggt
gttggtctgactcccagaattggtatgacaccatcaagggactcttttgggatcacccca
aaaggaactcccatcagggatgaactccatataaatgaagatatggatatacatgatact
gaaaaacttgagcaacgaagacaggctgatctgagaaggaatctgcgttctggtcttggt
aatcttccacaacccaagaatgaataccagatagtcatccaactgcctccagaagacaat
gaagaaccagaggagaagattgaagaggatatgtctgatagaatagcgagggaaaaagct
gcggaagaagcccggctgcaggcattacttaggaagagatcaaaagtactgcaaagggaa
ctccctcggcctcctacggcatcattggaattaattagagattctttgctgagagctgat
ggggataagagttcctttgttcctcctacatcaattgaacaggctgatgaaatgataaga
aaggagcttttagccttactagaacatgataatgcaaagtatccacttgaagagaagcca
agcaaggagaaaaagaaaggctccaagcacccttcaaaaagatctgctgcttctatccct
atgatagaggactttgaagaagatgagctgaaacaagctgataatttgataaaagtggaa
gctcagtacatacgtgtagctatgggacatgaagatgaatcccttgatgaatttattgaa
gcacacaaaacatgcataaatgacctcatgtacttccccactcgcaatgcttatggtctc
tccagtgttgctggaaacatggagaaacttgcggcattgcagaatgaatttgagattgtg
aaaacaaggttagaggctgaaagggagaaggcattaaggcttgagaagaaggtcaatgtt
ctcactcaaggttatcagatacgggcagaaaggcaacttttgcctccaattgaggtgacc
ttaaagcagatggacaccgctggaacagaactggagtgcttccaagctttgcagaggcaa
gagcaattagcagcatcacacaggatcaatggtctttgggaggaagttcagaagcaaaag
gagctagagcaaactttgcaaaggagatatggagatcttgttgctgagctagaaaggata
caacagctcataattaattacagagcactagccatacaacaagaagaaattgctgcaaag
aatcgtgcccttgagttggcccaagccacagcaaagcaagctgccatactgaacactgaa
ctgtctgagcctatgccttccgatgaacttggaagttctttgccggtaggttcatctgat
gaaaaagcttcagatcagcaaatggatattgattcagagaaggtgcacagtgcacgggcc
acagatacaagcttgaccaacaatgtgccttctgatcctatgccttcagatgaacttgga
agttctttgccggttggttcatctgatgaaaaagtttcagatcagcaaatggatgttgat
tcagagaaggtgcacagtgcacgggccacagatacaagctttaccaacaatgtgccttct
gatgaggtgcggacaacacttgtacaaggtagtggccatgaagcttctggtacttgtccc
tctggttcagatataaataaccaaaatggagttccagttccaacaggggactcaataaac
agaggagatattatatctaaagttgccgttgcagtggagaataaggtgaataatgattct
gttggcgtggatgctggtgatgctgttataattacagaagttatgaaggacagctcagct
gccattgaaggagagagtatacaagaaagagttgatggctttgccactgctgatgtgatg
caggtttccagtggcggagatgataaagtcaatcaattgaaggatgaaggaaaattgcct
gtcattgttgtggatcttactagctctgaatag

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