Populus trichocarpa (black cottonwood): 7487707
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Entry
7487707 CDS
T01077
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
pop04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7487707
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
7487707
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
7487707
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7487707
03036 Chromosome and associated proteins [BR:
pop03036
]
7487707
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
7487707
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
7487707
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
7487707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
DUF4187
P2R3B_EF-hand
Motif
Other DBs
NCBI-GeneID:
7487707
NCBI-ProteinID:
XP_002319110
LinkDB
All DBs
Position
13:3357368..3367373
Genome browser
AA seq
538 aa
AA seq
DB search
METTTSDVAMLDAELLQLPEVAALDFKSYPDFAQKLFDQWLSLPDANKLVTSLVNDAKTG
APLNISGNSSSANSATGSSLPSMFPAGSTPPLSPRSSTGSPRVTKQRVGPSNLGSPLKVV
SEPIKELIPQFYFQNGRPVPNELKEQCLIRINHFFYGHSDGLQIHDFKSITKEVCKLPSF
FSTVLFRRIDVNSTNFVTRDAFLNYWINGNMLTLDLATQIFTILKQPDLKYLTQENFKPV
LRELLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRSGNGHLTLRDLKRGNLIDAMQH
ADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFS
QVARKFTSKVEGKMGYEDFVYFILSEEDKSSDPSLEYWFKCIDLDGNGILTRNEMQFFYE
EQLHRMECMAQEPVLFEDILCQIIDMIGPEDDGYITLRDLKGCKLSGSVFNILFNLNKFM
AFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDVEDASNGSAEVWDESLEAPF
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgacgacgagcgatgttgcgatgttagatgcggagttgcttcagctaccagag
gttgctgctttagatttcaaatcttaccctgactttgcccaaaaactcttcgatcagtgg
ctctcccttcctgatgccaataagctggtgacatccctggttaatgatgccaagacaggt
gctcccttgaatatctctggaaattcatctagtgcaaattctgccaccggcagttcctta
ccgtctatgtttcctgcggggagtacaccacctctttccccccgaagttcaaccggttct
cctcgtgtgacaaaacaaagggttggcccttcaaatttaggttctcctctaaaagtagtc
agtgagccaataaaggagttgataccacagttttattttcaaaatggtcgtccagtgcca
aatgagctaaaagaacaatgcttgattcggatcaatcactttttctatggccattcagat
ggactgcagatacatgatttcaaatcaatcactaaggaagtatgcaagctgccgtcattc
ttttccacagttctatttagaaggattgatgttaatagcaccaattttgtgacaagggat
gcttttctcaattattggataaatggcaacatgttgacattggatttagctacccaaata
ttcacaattttaaagcaaccagatctcaaatacctcacccaggaaaactttaaacctgtg
cttcgagaattactggcaacacatcctggattggagtttttacagagcacacctgagttt
caggaaagatatgctgaaactgtaatatacagaattttttactacataaatagatccggg
aatggtcatcttaccctcagggatctgaagcgtgggaatttaattgatgcaatgcaacat
gcagatgaagaagaggacataaataaagttttgaggtacttttcttatgagcacttttat
gtgatatactgcaagttttgggagctggacacagatcatgattttcttatcgacaaagag
aaccttattagatatgggaatcatgcacttacctaccggattgttgatagaatattttcc
caggttgcaagaaaatttactagtaaggttgaaggaaagatgggatatgaagattttgtg
tatttcatactttcagaggaagacaagtcatctgatcctagtcttgagtattggttcaag
tgcatagatttggatggaaatggaattctgacacggaatgagatgcaattcttttatgag
gagcagttgcatcggatggaatgcatggctcaagagcctgtgctttttgaagatatattg
tgccagataattgacatgattggaccagaggatgatggctatatcaccctccgtgaccta
aaaggttgtaaactttcagggagtgttttcaacatccttttcaaccttaataaatttatg
gcctttgaaacccgcgatccatttctcattcgtcaggagcgtgagaatccaacattgaca
gagtgggatcgttttgcgcatagagaatatattaggctttcaatggaagaagatgttgaa
gatgcttctaatggtagtgcagaagtttgggatgaatcacttgaggctccattctga
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