Populus trichocarpa (black cottonwood): 7487711
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Entry
7487711 CDS
T01077
Name
(RefSeq) peroxisome biogenesis protein 12-like isoform X1
KO
K13345
peroxin-12
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
7487711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7487711
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Peripheral membrane proteins
7487711
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pex2_Pex12
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
PRIMA1
NinF
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
7487711
NCBI-ProteinID:
XP_052302241
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Position
13:complement(3404017..3414390)
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AA seq
393 aa
AA seq
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MLFQVGGQGTRPTFFEMAAAQQLPASLRAALTYSIGVMALRRPFLHKVLDCEDEFFSLLM
LVLETHSLRTTDASFAESLYGLRRRAVKIRVKKEDARPKSGDGIQHSGLEKHQRILSVVF
LVVLPYFKSKLHSIYNKEREARLQASLWGNGDETVEDAEYFSGGDASLVSGETLDAEATI
RARLTKKIQKIVFSCYPWLHASSEGMSFAYQLLYLLDATGFYSFGLHALGIHVCRATGQE
LMDTSSRISKIRSNERDRLRGPPWLKTFQGALLSCAYTMLDYAQTGLIAAVFIFKMMEWW
YQSAEERMSAPTVYPPPPPPPPPKVAKEGIPLPPDRTICPLCSQMRANPSVVTISGFVFC
YACIFKYVSQYNRCPVTLMPANVDHIRRLFHDM
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgttatttcaagtaggaggacaagggacacgtcccaccttcttcgagatggctgctgcc
caacaactccccgccagtctccgtgctgcccttacctactccattggtgtaatggcatta
agaagaccgtttctgcataaggtgttggactgtgaagatgaattcttttcgttgcttatg
ttggtccttgagactcatagcttgcgtactacagatgcttcttttgctgaatctctatat
ggattgcgaagaagggcagtgaagataagagtaaagaaggaagatgcacgtccaaaatca
ggggatggaattcagcactctggtttagaaaagcaccaaagaattctttcagttgtattt
ttggttgtgttgccttattttaagtcaaaattgcattcaatatataacaaagaaagggaa
gccaggctccaagcaagtttgtggggaaatggcgatgaaacagttgaagatgctgaatat
tttagtggaggggatgcttctcttgtttctggagaaacattggatgcagaagcaactatt
agagcacgtttgacaaagaaaattcagaaaattgtatttagttgctacccatggctgcat
gctagtagtgaaggaatgtcatttgcatatcagctcttatatttgctggatgccactggg
ttctattcgtttggactacatgcacttgggattcatgtttgtcgagctactgggcaagag
ctgatggacacttcttctagaatttctaagataagaagcaatgaacgtgatagacttcgt
ggccccccatggctgaagacatttcaaggtgcattgctgagctgtgcatatacaatgctt
gactatgcacaaactggcttaattgcagcagtgttcatctttaaaatgatggagtggtgg
taccaatctgctgaggagagaatgtcagctccaacagtgtaccctccacccccaccacct
ccacccccaaaggttgccaaagaggggattccactgccacctgatagaacaatctgccca
ttgtgctcccagatgcgtgcaaatccttctgttgttacgatctcgggatttgttttctgt
tatgcttgcatattcaaatacgtatctcagtataaccgctgcccagtcacattgatgcca
gcaaacgttgatcatataaggaggttgttccatgatatgtag
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