Populus trichocarpa (black cottonwood): 7487714
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Entry
7487714 CDS
T01077
Name
(RefSeq) protein CHROMATIN REMODELING 20-like
KO
K10779
transcriptional regulator ATRX
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7487714
03036 Chromosome and associated proteins [BR:
pop03036
]
7487714
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
7487714
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
7487714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
7487714
NCBI-ProteinID:
XP_024439358
LinkDB
All DBs
Position
13:complement(3466679..3484805)
Genome browser
AA seq
1488 aa
AA seq
DB search
MEDKHEEVEDIESGLSDSFIDDDDEDSNNDDDNEPSTSGQDDGTRIQEPLTDQEVEELVA
EFLEVESKAAEAQEALEKESLAKVESDVREELARSLQGDDLEAAVEDEMATFREEWENVL
DELETESYHLLEQLDGTGIELPNLYKWIESQAPNSCCTEAWKRRAHWVGTQMTKETTDTV
ADAEKYLQIHRPVRRKHGKLLEEGASGFLQKKLAMDGSEAIAENREVDWASMKKLFSTSS
SEDVASFGSKHWASVYLANTPQEAALMGLKFPGVNEVEEIEDIDGNSTDPFVAEAIANEK
ELVLSEEQRKNYRKVKEEDDAKIDQKLQLRLKQRRRLKRCKQGVSSVVQEMGTNMAESLP
LDDNHHEVTCQDLKKDVCENSGDLDMEQLMSESNSVFPESDASEPRRSKRPNESEDLSIN
NKKIRTVIIDSDNEADILEDKSVHGIKVEDQSTLLENIGDPSAGCNPSQGSSEKFQCTAC
DKVAVEVHSHPLLKVIVCKDCKFLMEEKMHVKDPDCSECYCGWCGKNNDLVSCRSCRTLF
CTACIKRNIGEEYLYKVPVSGWQCCCCSPSLLQRLTSQLEKAMGSGDIMVSSSDSDSDSS
DTNDGVTISSKRKKQKKIRRIIDDAELGEETKRKIAIEKERQERLKSLKVKFSDKSKMMN
FASCSGNLPEGASVEVIGDATTGYIVNVAREKGEEAVRIPPSLSSKLKAHQVAGIRFLWE
NIIQSIRKVKSGDNGLGCILAHTMGLGKTFQVIAFLYTAMRGVDLGLRTALIVTPVNVLH
NWRKEFMKWTPSEVKPIRVFMLEDVSRERRVELLAKWRAKGGVFLIGYSAFRNLSLGKNV
KERNMAREMCSALQDGPDILVCDEAHIIKNTRAETTQALKLVKCQRRIALTGSPLQNNLM
EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTVDDVKIMNQRSHILYEQLKGFVQ
RMDMSVVKKDLPPKTVFVVAVKLSPLQRKLYKRFLDVHGFTNGRASNEKTSKSFFAGYQA
LAQIWNHPGILQLRKGREYVGNVENFLADDCSSDENVDYNTIVEEKSRNPNDFIQGKNDD
GFFQKDWWNDLLLENNYKEVDYSGKMVLLLDILVMSSDVGDKTLVFTQSIPTLDLIELYL
SRLPRLGKKGKFWRKGKDWYRLDGRTESSERQRLVERFNDPKNKRVKCTLISTRAGSLGI
NLYAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEG
LAARVVDRQQVYRTISREEMLHLFEFGDDENSDTLIDIGQEYRQADTRNISSQTANSLKQ
NASRSHGSCASDKVMESLVGKHRQRWIFDYHEHETLLQENEEEKLTKEEQDMAWEVYKRS
LEWEEVQRVSLDDSTFERKPPMSNGASSAPDASSIPVPSMARPASEASNGAPSQSILRSR
MVQRKCTNLSHLLTLRSQGTKAGCTTICGECAQEISWEDLKREGKAAR
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggaggataaacacgaggaagttgaggacattgagagtggtttaagtgattcatttatt
gacgacgacgacgaagattctaataatgatgatgataacgaaccttctacatctggacaa
gatgatgggacccgtattcaggaacctttgaccgaccaagaagtagaggagttggttgct
gagttcctggaagttgagagtaaggctgcagaggctcaagaagcactggaaaaggagtct
cttgcaaaagtagagagtgatgtgagagaggagttggcacgaagtctccagggtgatgat
ctggaggcagctgttgaagatgagatggctactttcagggaagagtgggaaaatgtgctc
gatgagctcgagactgagagttatcatttgttggaacaacttgatgggactggtattgag
ctgccaaacctttataagtggattgagagccaggctccaaacagttgctgcactgaagct
tggaaaagaagggcacactgggtgggaactcagatgaccaaggaaacgactgatacagta
gctgatgctgagaaatatcttcaaatccataggcctgttagacgaaaacatggtaaatta
ttggaggagggtgcaagtggattcctgcagaaaaaacttgcaatggatggaagcgaggct
attgcagaaaatagagaagtagattgggcctctatgaagaaactattctcaactagcagt
tctgaggatgttgcttcatttggcagcaagcattgggcttctgtttaccttgccaacact
ccccaggaagctgcacttatgggacttaaatttcctggagtcaatgaggttgaggagatt
gaagacattgatgggaattccactgatccatttgttgcagaggccatagcaaatgaaaag
gaattagttctttcagaggaacagagaaaaaattacagaaaggtcaaagaggaagatgat
gcaaaaattgatcagaaacttcaacttcgtttgaaacaaaggagacgtcttaagagatgt
aaacagggtgtcagctcagtcgtccaggaaatgggaacaaacatggctgagtcattgcct
ctggatgacaatcatcatgaggtcacatgccaagatttgaagaaagacgtgtgtgaaaat
tctggagaccttgatatggaacagttgatgagtgagagcaattcagttttcccagaatct
gatgcctctgaacccagaaggtccaagcgtccaaatgagagtgaggacctaagcatcaat
aataagaagattcggactgttatcatagacagtgacaatgaagcagacattttggaggat
aaatcagtacacggcattaaagttgaagaccaatcaactttgctagaaaacattggggac
ccttctgctggctgcaatccttcacagggttcaagtgagaagtttcagtgcactgcctgt
gataaagttgctgttgaagtgcactcacatccacttttgaaagtaattgtttgcaaagat
tgtaaattcttaatggaggaaaaaatgcatgtgaaggatcctgactgttctgagtgttac
tgtggatggtgtggaaaaaacaatgacttggtaagttgtaggtcatgcagaacattattc
tgcactgcttgtataaaaaggaacatcggtgaagagtacttgtataaggttccagtttct
ggttggcaatgttgttgctgctctccaagtctgctacaaagacttacatcacagttagag
aaagccatggggtctggagatataatggtttcaagttctgatagtgattcagactcttca
gatacaaatgacggtgttacaatcagctctaagagaaagaagcaaaagaagattagaaga
atcattgatgatgctgaattaggagaagagaccaagagaaaaattgctattgaaaaggaa
cgtcaagaacgcttgaaatccctgaaagtcaagttttctgacaaatccaagatgatgaat
tttgcaagctgtagcggaaacttacccgaaggtgctagtgttgaagtgattggtgatgcc
acaactggttatattgtgaatgttgcgagggaaaaaggtgaagaagctgtgaggattcct
ccaagcttatcatctaaattgaaagctcatcaggtggcagggataagatttctatgggaa
aatattatacagtcaattagaaaagtgaagtctggggataatggtcttggttgtatttta
gcgcatacaatgggccttggtaaaacttttcaggtcatagcttttctgtacactgccatg
agaggtgttgatctgggtttaagaacagcactaattgtgactcctgtgaatgtgctgcat
aactggcgcaaggagttcatgaagtggacaccttcagaagtaaagccgatccgtgttttc
atgctggaggatgtgtcgagggagagaagagtggaattgcttgcaaagtggagagctaaa
ggtggtgttttcttgataggctactctgcctttaggaacttatctctcggaaagaatgtg
aaggaacgaaatatggctagagaaatgtgtagtgccttgcaggatggacctgatatactt
gtttgtgatgaagcccacatcatcaagaacaccagagctgaaacaacccaggcactgaaa
ctcgttaagtgccagagaaggatagcattaactggatcacctcttcagaacaatctaatg
gagtattattgtatggttgattttgtaagagaaggttttcttggcagcagccacgagttt
cggaaccgcttccaaaatcctatagaaaatggacaacatactaattcaacggttgatgat
gtaaagataatgaaccaaagatctcatattctctatgaacaattgaaagggtttgttcaa
agaatggacatgagtgtggtgaagaaagacctgccacctaaaactgtatttgtagtggct
gtaaagctctcgccattacagaggaaattgtacaagagattccttgatgtgcatgggttc
acaaatggtagggcttcaaatgaaaagacgagtaagagcttttttgctggttaccaggca
ctggctcagatatggaaccatcctggaattttgcaattgaggaaagggagagaatatgtt
ggcaatgttgaaaactttcttgcagatgactgctctagtgatgaaaatgtggactacaat
acaattgtcgaagagaagtcaaggaatccaaatgattttattcaagggaaaaacgatgat
ggattctttcaaaaggattggtggaatgatcttctacttgaaaataattataaagaggtt
gattacagcggcaaaatggtattgctgcttgacattttagtcatgtcttctgatgtgggt
gataagacgttggtttttacccagagcatacccactttagatctgatagagctttatctt
tcaagattacctcgacttggaaaaaagggaaagttttggagaaaaggaaaagactggtat
aggctagatggaagaacagagagctctgaaagacagaggttggttgagaggttcaatgat
cccaagaataaacgggtcaagtgtactttgatttctaccagggctggttctcttgggatt
aatctctatgctgctaaccgggtggttattgttgatggctcttggaatccaacgtatgat
cttcaggccatatatcgggcttggaggtatggccagactaagccagtgtttgcttacaga
ttaatggcacatggaaccatggaagaaaaaatctataagcgtcaggtaacaaaggaggga
cttgctgcaagggtggttgatagacaacaagtatataggactatctccagagaagaaatg
ttgcatctttttgaatttggtgatgatgaaaactcagacacactaattgacattggccaa
gagtatagacaggcagataccaggaatatttctagccaaaccgcaaattctttgaaacag
aatgcgtctcgttctcatggaagctgtgcttctgataaggtgatggaaagcttggttggc
aagcaccgtcagaggtggattttcgattaccatgaacatgagactcttttgcaagagaat
gaagaggaaaaactaacaaaggaggagcaagacatggcttgggaagtatataagagatca
ttagaatgggaagaagtgcagcgagtttcccttgatgattccacttttgagcgaaagcca
cccatgtcaaatggtgcatcttctgccccagatgcaagcagcatacctgtgccaagcatg
gcccgtcctgcatctgaggcttccaatggagcaccttcccagagcattttaaggagtcgt
atggtgcagcggaaatgtactaatctctctcatttgctgacccttagaagtcagggaacg
aaagctgggtgcactactatatgtggggaatgtgcccaggagataagctgggaagatctg
aaacgggagggtaaggcagcacggtaa
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integrated database retrieval system
