KEGG   Populus trichocarpa (black cottonwood): 7487726
Entry
7487726           CDS       T01077                                 
Name
(RefSeq) protein PIR isoform X1
  KO
K05749  cytoplasmic FMR1 interacting protein
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7487726
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     7487726
   Factors involved in mRNA localization
    Other mRNA localization factors
     7487726
SSDB
Motif
Pfam: FragX_IP CYRIA-B_Rac1-bd WASH-4_N
Other DBs
NCBI-GeneID: 7487726
NCBI-ProteinID: XP_024439336
LinkDB
Position
13:3632784..3652702
AA seq 1283 aa
MAVPVEEAIAALSTFSLEDEQAEVQGAGLLVSSERGATNSPIEYTDVSAYRLSLSEDTKA
LNQLNGLIQEGKEMASVLYTYRSCVKALPQLPESMKQSQADLYLETYQVLDLEMSRLREI
QQWQASASSKLAADMQRFSRPERRINGPTITHLWTMLKLLDVLVQLDHLKNAKASIPNDF
SWYKRTFTQVSVQWQDIDSIREELDDLQIFLSTRWAILLNLHVEMFRVNTVEDILQVLIV
FAIESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPII
PAFPDLHLSPAAILKELSIYFQRFAAQTRLLTLPAPHELPPREAQDYQRHYLIVNHIGTI
RAEHDDFTIRFASSLNQLLLLKSIDGADVDWCKEVKGNMYDMVVEGFQLLSRWTARIWEQ
CAWKFSRPCKDAIPSESNGTSESFFDYEKVVRYNYSAEERKALVELVSYIKSVGSLMHRC
DTLVADALWETIHAEVQDFVQNTLATMLKTTFRKKKDLSRIVSDMRTLSADWMANTNKPE
SYLQSHGGDESKGNFFYPRPVAPTATQVHCLQFLIYEVVSGGNLRKPGGLFGNSGSEIPV
NDLKQLETFFYKLGFFLHILDFSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWML
VDHVLESQNAGLLESVLMPFDIYNDSAQQALAALRQRFLYDEIEAEVDHCFDLFVSKLCE
IIFTYYKSWAASELLDPSFLFASDNREKYSVQPMRFTALFKMTRVKLLGRTVDLRRLVSE
RMNKVFRDNLEFLFDRFESQDLCAVVELEKLVEILKHAHGLLSKDLSIDSFSLMLNEMQE
NLSLVSFSSRLATQIWSEMQNDFLPNFILCNTTQRFVRSSRVPLVPMQKPSVPCAKPNFY
CGTQELNSAHQSFARLHSGFFGIPHMFSTVRLLGSRSLPWLIRALLDHISNKVSTLEPMI
TGLQEALPKSIGLLPFDGGVTGCMRVVKENLNWGTKSELKAEVLRGIKEIGSVLYWMGLL
DVVLREVDTMHFMQTAPWLGLFPDADGQILLSQDGGDSPVVNLFKSATAAVMSNPGCPNP
TSFYTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCCKWSAAPKTGFIDITTSK
DFYRIYSGLQIGHLEDSVQVSSNFEVLGDSVAWGGCTIIYLLGQQMHFELFDFSYQVLNV
AEVEAGLLTQAHKNPHVAQGWETLLEAMKKARRLNNHVFSMLKARCPLEDKIACAIKQSG
APLHRIKFENTVSAFETLPQKGA
NT seq 3852 nt   +upstreamnt  +downstreamnt
atggcagttccagtagaagaagccatagcagctctctctaccttttctcttgaggatgag
caagcagaggtgcaaggagctgggcttttggtttcatctgaaagaggagcaaccaacagt
cctattgagtatactgatgtttctgcttaccgcttatctctatcagaagacacaaaagct
ctcaatcagctgaatggacttatccaagaggggaaggagatggcatcagtgctttataca
tatcgtagctgtgtcaaagcacttcctcagcttcctgaatccatgaagcaaagtcaggct
gacttgtatctagaaacatatcaagttttggacttggagatgagtcgtctgcgtgaaatc
cagcaatggcaagcatctgcttcatcaaaactagcagctgatatgcagcggttttctagg
cctgagcggcgcattaatggccccacaattactcatctatggaccatgttgaagttgctt
gatgttttagttcaacttgatcatcttaaaaatgctaaggcaagcatacctaatgacttc
tcatggtacaagaggacatttacccaagttagtgttcagtggcaagatattgattcaata
agggaggagttagatgatttacagatattcttaagcacaaggtgggcaatcttattgaac
ttgcacgtcgaaatgtttcgggtgaacactgtagaagatattcttcaagttctgatagtt
tttgccattgagtcattggaattggattttgcgcttttgtttccggagaggcacattctt
ctacgtgttttaccagttcttgttgtcttggcaacttcatcagaaaaagacagtgagtca
ctgtataagagggtaaaaatcaacaggctgataaatatttttaagaatgatccgatcatt
cctgccttccctgatcttcatctttctcctgctgcaatcttgaaagagctgtccatttac
tttcagagatttgctgcacaaactcgtctcctcacccttccagcacctcatgagctccca
cctcgggaggcacaagattatcagaggcattatctcattgttaatcacataggaactatt
cgtgctgagcatgatgatttcacaattcgttttgcttcatccttgaatcagctattgtta
ttgaagtcaatagatggtgcagatgttgactggtgcaaagaagtcaagggaaacatgtat
gatatggttgttgaaggtttccagctcttaagcagatggactgcacgaatttgggaacaa
tgtgcttggaaattttctcgcccatgcaaagatgcaattccttcagaatctaacggaacc
tcagaatcattttttgactacgaaaaggtggtacgatataattacagtgctgaggagagg
aaagcacttgttgagctcgttagttacattaagagtgttggatcactgatgcatcggtgt
gacacattggtagctgatgccttatgggaaacaatacacgctgaagtccaagattttgtc
caaaacacattagccaccatgttgaagactacctttagaaagaagaaggacctgtcgagg
attgtttctgacatgaggactctttcagcagactggatggcaaatacaaacaagcctgaa
tcttatttacagtcacatggaggtgatgaaagcaaagggaacttcttttatccaaggcca
gtggcacccacagccacacaggtccattgcttgcagttcttgatatatgaagtggtgtct
ggtggtaatcttcggaagcctggtggactctttggcaacagtgggtctgagattcctgta
aatgatttaaagcagttggagaccttcttttacaagcttggcttcttcctgcatatattg
gacttttcagcgactgttgcaactttgacagatcttggtttcttatggtttagagaattt
tatttggagtcatctcgtgtgattcagtttcctattgaatgttctcttccctggatgctg
gtagatcatgtgctcgagtcccagaatgcaggtcttcttgaaagcgttctgatgccattt
gacatctacaatgattcagctcagcaagctctggctgccttaaggcagcgattcctctat
gatgaaattgaggctgaggtggaccattgttttgatttatttgtttcaaaactctgtgaa
attattttcacttattacaagagttgggcagcaagtgaactacttgatccatcattcctc
tttgcctcagacaatagagaaaaatattctgtacagcctatgaggttcactgcactattt
aagatgactagagtaaagttacttgggaggaccgttgatttaagaaggttggtttctgaa
aggatgaacaaggtttttagagacaatctcgagtttctttttgatcgttttgagtctcag
gatctatgtgcagtggtggaattagaaaaacttgtggaaatcttaaagcatgcccatggc
ctgctttcaaaagatctttcaatagactcattcagtctcatgttgaatgagatgcaagaa
aacttatctcttgtgtcattttctagtcgacttgctactcagatttggtcagagatgcaa
aacgatttcctgccaaacttcatcctatgcaacactactcagcgttttgtccgatcatca
agagttcctcttgttcctatgcaaaagccgtcagttccctgtgcaaagcctaacttctat
tgtggtactcaggagttgaattctgcgcatcaaagctttgcgcgtttgcacagtgggttc
tttggaattccccacatgttttctactgttagacttctaggatccagatcattgccttgg
cttatccgggccctgctagatcatatatcaaataaggtaagtacacttgaaccgatgatt
actggattgcaagaagcgttgccaaaatctattggactgctcccttttgatggaggagtc
acaggctgtatgagggttgtcaaagaaaatcttaactggggaacaaaatcagagctcaaa
gcagaggttcttcgaggaataaaggagattggcagtgtgttatattggatggggcttctt
gatgttgtattgagggaagttgataccatgcatttcatgcaaacagccccttggttgggc
ttgtttcctgatgcagatggtcaaatattgctttcacaggatggaggggatagtcctgtt
gtcaatcttttcaaatcagccaccgctgcagtcatgtccaaccctggttgtccaaatcca
acatctttttataccatgtcaaaacaggcagaagctgcagatcttctttacaaagctaac
atgaatactggaagtgtgctggaatatgcccttgcttttaccagtgctgcattggataaa
tattgctgtaaatggagtgctgctcccaagacagggttcattgacattacaacttcaaag
gatttttaccgtatatatagtggccttcaaattggacacctggaggattctgttcaagta
tcatcgaattttgaagtgttgggtgactcagttgcttggggtggttgtaccattatctac
ttgcttgggcagcagatgcattttgaactctttgatttttcatatcaagtcctcaatgtt
gcagaagtagaggctggattactcacccaagcacataagaatccccatgttgcccaggga
tgggaaaccctattagaagcaatgaagaaagcaagaaggttgaacaatcatgttttctca
atgctgaaagcccgttgcccccttgaggacaagatagcttgcgctatcaagcaaagcggt
gcccctctgcatcggattaagttcgagaacactgtttcagcatttgaaacattgcctcaa
aaaggtgcctga

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