Populus trichocarpa (black cottonwood): 7487726
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Entry
7487726 CDS
T01077
Name
(RefSeq) protein PIR isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7487726
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
7487726
Factors involved in mRNA localization
Other mRNA localization factors
7487726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
WASH-4_N
Motif
Other DBs
NCBI-GeneID:
7487726
NCBI-ProteinID:
XP_024439336
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All DBs
Position
13:3632784..3652702
Genome browser
AA seq
1283 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDEQAEVQGAGLLVSSERGATNSPIEYTDVSAYRLSLSEDTKA
LNQLNGLIQEGKEMASVLYTYRSCVKALPQLPESMKQSQADLYLETYQVLDLEMSRLREI
QQWQASASSKLAADMQRFSRPERRINGPTITHLWTMLKLLDVLVQLDHLKNAKASIPNDF
SWYKRTFTQVSVQWQDIDSIREELDDLQIFLSTRWAILLNLHVEMFRVNTVEDILQVLIV
FAIESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPII
PAFPDLHLSPAAILKELSIYFQRFAAQTRLLTLPAPHELPPREAQDYQRHYLIVNHIGTI
RAEHDDFTIRFASSLNQLLLLKSIDGADVDWCKEVKGNMYDMVVEGFQLLSRWTARIWEQ
CAWKFSRPCKDAIPSESNGTSESFFDYEKVVRYNYSAEERKALVELVSYIKSVGSLMHRC
DTLVADALWETIHAEVQDFVQNTLATMLKTTFRKKKDLSRIVSDMRTLSADWMANTNKPE
SYLQSHGGDESKGNFFYPRPVAPTATQVHCLQFLIYEVVSGGNLRKPGGLFGNSGSEIPV
NDLKQLETFFYKLGFFLHILDFSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWML
VDHVLESQNAGLLESVLMPFDIYNDSAQQALAALRQRFLYDEIEAEVDHCFDLFVSKLCE
IIFTYYKSWAASELLDPSFLFASDNREKYSVQPMRFTALFKMTRVKLLGRTVDLRRLVSE
RMNKVFRDNLEFLFDRFESQDLCAVVELEKLVEILKHAHGLLSKDLSIDSFSLMLNEMQE
NLSLVSFSSRLATQIWSEMQNDFLPNFILCNTTQRFVRSSRVPLVPMQKPSVPCAKPNFY
CGTQELNSAHQSFARLHSGFFGIPHMFSTVRLLGSRSLPWLIRALLDHISNKVSTLEPMI
TGLQEALPKSIGLLPFDGGVTGCMRVVKENLNWGTKSELKAEVLRGIKEIGSVLYWMGLL
DVVLREVDTMHFMQTAPWLGLFPDADGQILLSQDGGDSPVVNLFKSATAAVMSNPGCPNP
TSFYTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCCKWSAAPKTGFIDITTSK
DFYRIYSGLQIGHLEDSVQVSSNFEVLGDSVAWGGCTIIYLLGQQMHFELFDFSYQVLNV
AEVEAGLLTQAHKNPHVAQGWETLLEAMKKARRLNNHVFSMLKARCPLEDKIACAIKQSG
APLHRIKFENTVSAFETLPQKGA
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggcagttccagtagaagaagccatagcagctctctctaccttttctcttgaggatgag
caagcagaggtgcaaggagctgggcttttggtttcatctgaaagaggagcaaccaacagt
cctattgagtatactgatgtttctgcttaccgcttatctctatcagaagacacaaaagct
ctcaatcagctgaatggacttatccaagaggggaaggagatggcatcagtgctttataca
tatcgtagctgtgtcaaagcacttcctcagcttcctgaatccatgaagcaaagtcaggct
gacttgtatctagaaacatatcaagttttggacttggagatgagtcgtctgcgtgaaatc
cagcaatggcaagcatctgcttcatcaaaactagcagctgatatgcagcggttttctagg
cctgagcggcgcattaatggccccacaattactcatctatggaccatgttgaagttgctt
gatgttttagttcaacttgatcatcttaaaaatgctaaggcaagcatacctaatgacttc
tcatggtacaagaggacatttacccaagttagtgttcagtggcaagatattgattcaata
agggaggagttagatgatttacagatattcttaagcacaaggtgggcaatcttattgaac
ttgcacgtcgaaatgtttcgggtgaacactgtagaagatattcttcaagttctgatagtt
tttgccattgagtcattggaattggattttgcgcttttgtttccggagaggcacattctt
ctacgtgttttaccagttcttgttgtcttggcaacttcatcagaaaaagacagtgagtca
ctgtataagagggtaaaaatcaacaggctgataaatatttttaagaatgatccgatcatt
cctgccttccctgatcttcatctttctcctgctgcaatcttgaaagagctgtccatttac
tttcagagatttgctgcacaaactcgtctcctcacccttccagcacctcatgagctccca
cctcgggaggcacaagattatcagaggcattatctcattgttaatcacataggaactatt
cgtgctgagcatgatgatttcacaattcgttttgcttcatccttgaatcagctattgtta
ttgaagtcaatagatggtgcagatgttgactggtgcaaagaagtcaagggaaacatgtat
gatatggttgttgaaggtttccagctcttaagcagatggactgcacgaatttgggaacaa
tgtgcttggaaattttctcgcccatgcaaagatgcaattccttcagaatctaacggaacc
tcagaatcattttttgactacgaaaaggtggtacgatataattacagtgctgaggagagg
aaagcacttgttgagctcgttagttacattaagagtgttggatcactgatgcatcggtgt
gacacattggtagctgatgccttatgggaaacaatacacgctgaagtccaagattttgtc
caaaacacattagccaccatgttgaagactacctttagaaagaagaaggacctgtcgagg
attgtttctgacatgaggactctttcagcagactggatggcaaatacaaacaagcctgaa
tcttatttacagtcacatggaggtgatgaaagcaaagggaacttcttttatccaaggcca
gtggcacccacagccacacaggtccattgcttgcagttcttgatatatgaagtggtgtct
ggtggtaatcttcggaagcctggtggactctttggcaacagtgggtctgagattcctgta
aatgatttaaagcagttggagaccttcttttacaagcttggcttcttcctgcatatattg
gacttttcagcgactgttgcaactttgacagatcttggtttcttatggtttagagaattt
tatttggagtcatctcgtgtgattcagtttcctattgaatgttctcttccctggatgctg
gtagatcatgtgctcgagtcccagaatgcaggtcttcttgaaagcgttctgatgccattt
gacatctacaatgattcagctcagcaagctctggctgccttaaggcagcgattcctctat
gatgaaattgaggctgaggtggaccattgttttgatttatttgtttcaaaactctgtgaa
attattttcacttattacaagagttgggcagcaagtgaactacttgatccatcattcctc
tttgcctcagacaatagagaaaaatattctgtacagcctatgaggttcactgcactattt
aagatgactagagtaaagttacttgggaggaccgttgatttaagaaggttggtttctgaa
aggatgaacaaggtttttagagacaatctcgagtttctttttgatcgttttgagtctcag
gatctatgtgcagtggtggaattagaaaaacttgtggaaatcttaaagcatgcccatggc
ctgctttcaaaagatctttcaatagactcattcagtctcatgttgaatgagatgcaagaa
aacttatctcttgtgtcattttctagtcgacttgctactcagatttggtcagagatgcaa
aacgatttcctgccaaacttcatcctatgcaacactactcagcgttttgtccgatcatca
agagttcctcttgttcctatgcaaaagccgtcagttccctgtgcaaagcctaacttctat
tgtggtactcaggagttgaattctgcgcatcaaagctttgcgcgtttgcacagtgggttc
tttggaattccccacatgttttctactgttagacttctaggatccagatcattgccttgg
cttatccgggccctgctagatcatatatcaaataaggtaagtacacttgaaccgatgatt
actggattgcaagaagcgttgccaaaatctattggactgctcccttttgatggaggagtc
acaggctgtatgagggttgtcaaagaaaatcttaactggggaacaaaatcagagctcaaa
gcagaggttcttcgaggaataaaggagattggcagtgtgttatattggatggggcttctt
gatgttgtattgagggaagttgataccatgcatttcatgcaaacagccccttggttgggc
ttgtttcctgatgcagatggtcaaatattgctttcacaggatggaggggatagtcctgtt
gtcaatcttttcaaatcagccaccgctgcagtcatgtccaaccctggttgtccaaatcca
acatctttttataccatgtcaaaacaggcagaagctgcagatcttctttacaaagctaac
atgaatactggaagtgtgctggaatatgcccttgcttttaccagtgctgcattggataaa
tattgctgtaaatggagtgctgctcccaagacagggttcattgacattacaacttcaaag
gatttttaccgtatatatagtggccttcaaattggacacctggaggattctgttcaagta
tcatcgaattttgaagtgttgggtgactcagttgcttggggtggttgtaccattatctac
ttgcttgggcagcagatgcattttgaactctttgatttttcatatcaagtcctcaatgtt
gcagaagtagaggctggattactcacccaagcacataagaatccccatgttgcccaggga
tgggaaaccctattagaagcaatgaagaaagcaagaaggttgaacaatcatgttttctca
atgctgaaagcccgttgcccccttgaggacaagatagcttgcgctatcaagcaaagcggt
gcccctctgcatcggattaagttcgagaacactgtttcagcatttgaaacattgcctcaa
aaaggtgcctga
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integrated database retrieval system