Populus trichocarpa (black cottonwood): 7487777
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Entry
7487777 CDS
T01077
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7487777
09123 Folding, sorting and degradation
03018 RNA degradation
7487777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7487777
03041 Spliceosome [BR:
pop03041
]
7487777
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7487777
mRNA degradation factors
5'-3' decay
Lsm complex
7487777
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
7487777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
7487777
NCBI-ProteinID:
XP_002301475
UniProt:
B9GS94
LinkDB
All DBs
Position
2:complement(17088322..17090785)
Genome browser
AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEIKSRSDRKPPGVGRGRGRGREDGPGGRPAKGIGRGLED
VAAKGMGGGRGRGGPGGKIGGSRGAGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctttactcaagactgctcaaggccacccaatgttggtggaattgaaa
aacggagagacttacaatgggcatttggtcaattgtgatacttggatgaacatccatctc
cgtgaagttatctgtacctctaaggatggagataggttttggcggatgcctgaatgctac
attcgtgggaatactattaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaaatcaagagtcgctcagatcggaagccacctggagtagggcgtggaagaggaaga
ggtagagaagatggtcctggtggaaggccagcaaaagggattgggcgtggccttgaagat
gtagctgctaagggcatgggtggaggtcgtggcagaggtggtccaggcggaaagattggt
gggagcagaggtgcaggccgaggccggggctaa
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