Populus trichocarpa (black cottonwood): 7487835
Help
Entry
7487835 CDS
T01077
Name
(RefSeq) probable starch synthase 4, chloroplastic/amyloplastic isoform X1
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00500
Starch and sucrose metabolism
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
7487835
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pop01003
]
7487835
Enzymes [BR:
pop01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
7487835
Glycosyltransferases [BR:
pop01003
]
Polysaccharide
Storage polysaccharide
7487835
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_transf_5
Glyco_transf_4
Glycos_transf_1
Glyco_trans_1_4
Glyco_trans_4_4
DUF2388
CEP162_coil_mid
DUF7792
COG4_N
Kazrin
Flg_hook
Motif
Other DBs
NCBI-GeneID:
7487835
NCBI-ProteinID:
XP_052303655
LinkDB
All DBs
Position
1:complement(36506437..36517304)
Genome browser
AA seq
1070 aa
AA seq
DB search
MATKLSTCFLSHRLATALNCNAITTTTNDPKHTNVRFLLPCHRLLSSSSFRIRNRNSRSS
QYKRRQMKKSSSTEDSESHQPQPQPQPQPQPQPPPTVFSAVPNDVTGASVLVDSETSTSV
DVERIEQLTDAQNPQRLTVSQEAKSLAIDVNIEEDEKHSSASDEMKQLAVNMGGGEQLSS
IQIEDLIGMIRNAEKNTLLLNKARVFALDDLERIFHEKDKLQGEINVLEMRLAENDAKMK
VAAQEKIRVELLEAQLEKLRNELAQRGATERSVFDLYESQNNVFNKEAPLLQNNTLLQNS
SVHSLSEELSLLRSENMSLKNDIEALREELSNVKNTDERVAILVKQHSLMKSSLQDLESK
LIASEEDVSKLSSLKVECKDLWEKVDTLQALLDKATKRADQAILVLQQNQDLRKKVDKLE
KSLEEAVVYKLSSEKLQQYNELMQQKMKLLEEHLQRSDEEIHSYVRLYQDSVQEFQDTLK
SLKEESKKRALDEPIDDMPWEFWSHLLLIIDGWLLEKKISTDDAKLLREMVWKRDGRICE
AYMESREKNEREAVSRFLKLTSSPKSSGLSIIHIAAEMAPVAKVGGLGDVVTGLCKALQK
RGHLVEIVLPKYDCMQYDRIHNLRALDVVVESYFDGKLYKNKIWVGTVEGLPVYFIEPQH
PEKFFWRGQFYGEHDDFRRFSFFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYA
PKGLNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMQDNSAHDRVNPVKGAVV
FSNIVTTVSPTYAQEVRTAEGGKGLHSTLSFHSKKFVGILNGIDTDAWNPATDTSLKVQY
NVNDLQGKTENKIALRKFLGLSNADVRQPMVGCITRLVPQKGVHLIRHAIYRTLELGGQF
VLLGSSPVAHIQREFEGIANHFESHHHIRLILKYDESLSHSIFAASDIFIIPSIFEPCGL
TQMIAMRYGSIPIVRKTGGLNDSVFDVDDDTVPPQFRNGFTFSTPDEHGVNSALDRAFNY
YRNNTEVWQQLVQKDMNMDFSWELSTSQYEELYLKSVARARVAANRAQGL
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaaactatcaacttgttttctgagccatcgccttgctactgctttaaattgc
aatgctattactactaccactaatgatcccaagcacacaaatgttcgattcttgttgcct
tgtcatcgattactctcatcctcctctttcagaataaggaatcgcaactcgagaagctcg
cagtataagcgtagacaaatgaagaaatcttcttctacagaggattccgagagtcatcaa
ccacaaccacaaccacaaccacaaccacaacctcaaccccctcctacggtgtttagtgct
gtaccaaatgatgttactggcgctagcgtactcgtagattcggaaactagtaccagtgta
gatgtggagcggattgagcaactcactgatgcacaaaatccacaacgtcttaccgtgtcc
caagaagccaaatctttggctattgatgttaacatagaggaggatgagaagcattcaagt
gcatctgatgaaatgaaacaattggccgtaaacatgggtggcggagagcaactttcaagt
attcaaattgaagatttgataggcatgataagaaatgctgagaaaaatactcttcttctc
aacaaagctcgggtttttgcgcttgatgaccttgaaagaatttttcatgagaaggacaag
ttgcaaggagaaattaatgttttggagatgagattggcagaaaatgatgctaagatgaag
gttgccgctcaagaaaagatacgagtggaactcctggaagcccagttggagaaactaagg
aatgaactagctcagaggggtgctactgagagaagtgtgtttgatctgtatgagagccaa
aacaatgtttttaataaggaagcccctctacttcagaataacactctacttcagaatagc
agtgttcattctcttagtgaggagcttagtttattgaggtcggagaatatgtctctgaaa
aatgatatagaagcactcagggaagagcttagtaatgtcaagaatactgatgaacgtgtt
gcaatactggtgaagcaacactctttgatgaagtcttctctgcaagacctggagtccaaa
ctaatagcttctgaggaagatgtttcaaaattatctagtctaaaagttgaatgcaaggac
ttatgggagaaggtggatactttgcaagcactgctagataaggcaaccaagcgagcagat
caggctattcttgtgttgcagcaaaaccaggatctccgaaagaaggtagataaattggaa
aaatccctggaagaagccgttgtttataagctatcatcagaaaagttgcagcaatataat
gaactaatgcagcagaagatgaaactattggaggagcacctccagaggtctgatgaagag
atacattcttatgtccgattgtatcaagattctgtacaagaatttcaagatacactcaag
agtttgaaagaggaaagcaaaaaaagggcactggatgaacctatagatgatatgccctgg
gaattttggagtcatttactgctcataattgatggttggctgctcgagaagaaaatatct
acagatgatgcaaagcttttgagagaaatggtatggaagagagatgggcgtatttgcgag
gcatacatggaaagcagagaaaagaatgaacgtgaagctgtgtctaggtttctcaagctg
acatcatcacccaaaagttctggattatctatcattcatattgcagcagagatggcacca
gttgccaaggttggtggtttgggagacgtcgtgactggtctatgtaaagcactacaaaag
agaggacaccttgtggagattgttctgcctaaatatgattgcatgcaatatgatcggatt
cacaacttgagggccctagatgtggtggtggaatcatattttgatggcaaattatacaaa
aataaaatatgggttggaacagttgaaggtctcccagtttactttattgagcctcagcac
cctgaaaagttcttttggagaggacaattttatggagagcatgatgatttcagacgtttt
tcatttttcagccgtgcagcacttgagttacttcttcaatctggcaaaaaaccagatata
attcattgtcatgactggcagacagcttttgttgcaccactctattgggatttatatgcc
ccaaaagggttgaattcagccagaatatgttttacatgccacaactttgagtaccaaggg
actgcacctgcatcagaattggcatcttgtggacttgatgtccatcagctgaatagacca
gatcgaatgcaagacaactctgcacatgatagggtcaatcctgtcaagggtgcagtggta
ttctcaaacattgtgacaacagtatcacctacctatgcacaagaggtgcggactgctgag
ggtgggaaaggtctccattcgactcttagttttcactccaagaagtttgttggaattctt
aacggaattgatactgatgcatggaatcctgctactgatacttctctcaaagtccagtac
aatgttaatgatcttcaagggaaaactgaaaacaaaatagctttaagaaaatttcttggg
ctctctaatgcagatgtcaggcaaccaatggtaggctgcataacacgattggtgccacag
aaaggtgtgcatcttattagacatgcaatataccgaacactggagctgggaggacaattt
gtacttcttggttcaagcccagttgcacatattcagagggaatttgagggtattgctaac
cattttgagagtcatcatcacattcggctgatattgaagtatgatgaatctctctcccat
tccatttttgcggcatctgacatttttatcattccatcgatttttgagccttgtggcctc
acacagatgatagcaatgagatatggttccataccaattgtaagaaaaactggtggtcta
aatgacagtgtttttgatgttgatgatgataccgtgccgcctcaatttcggaatggcttt
acattctcgactcctgatgaacatggagtaaacagtgctttagatcgtgcatttaactac
tatagaaacaataccgaggtctggcagcagcttgttcagaaggacatgaacatggatttc
agttgggaattgtcaacatcgcaatacgaagaactttacttgaagtcagtggccagagca
agggtggcagcaaatcgagctcaaggattgtaa
DBGET
integrated database retrieval system
