Populus trichocarpa (black cottonwood): 7487837
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Entry
7487837 CDS
T01077
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
7487837
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7487837
03041 Spliceosome [BR:
pop03041
]
7487837
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
7487837
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
7487837
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
7487837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
zf_CCCH_4
PHM7_cyt
RRM_Nup35
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
7487837
NCBI-ProteinID:
XP_024444554
LinkDB
All DBs
Position
17:complement(7835774..7859160)
Genome browser
AA seq
964 aa
AA seq
DB search
MELKVSTLKTGGLSPADCISDPEEKEVSDEDDDDRNHKHRRREIRSQSLERDSLEPVFTR
PYRKRNKPFENGQFYQENDYNSVPLEKGFATKFERIRPGLVSLPRMPVDWNQRIRSNQTF
YGDPGLGRGRGREPVSWSQHDSRFSPVDIASQMVHQGQSLFTGRGLANVSNAQSASWNAY
GLFPGIPNGGLDKLRPIGLQATLRPAVTSSLNMGIPQQRCRDFEERGFCLRGDMCPMEHG
VNRIVVEDVQSLSQFNLPVSLPRAQLVGTTARPGALPTVGAPSATLINSKGMHSKCNKPG
IVNAGLGFNGAHTGSASVSGGDLYDPDQPLWNDSVPETSSALIAPHSPKIDEIESMISID
SFDHNHVSLRGGADNECPIRSTGIAVHSESLNSSVWGKVRASNNRLHVKEKTDLTVSMLN
NMESESKENQGALANVRGTSRQGKQINFEDSSAKTIDSPAKTQSNTMRHTPKPSQKALRT
LFVNGIPQKSNKREALLSHFQKFGEVIDIYIPLNTERAFVQFSKREEAEAALRAPDAVMG
NRFIRLWWANRDSIPDGGAGSSNSVSVTPRGVTSTSFPPHLPIGNSGKDNLQLSVSKATA
VPPSVAPVPAIDHSKVITTNVPKVPPPMQKLESLEQLKEELRKKQELLDQKRNDFRRQLD
KLEKQATGVKGEVTAEPASKRHKTGIPASDIVKAATPRSADPGSASPHAEMVDKNKTVEN
VVSSSSKTCVMMALQDSAGSKPSIHPLAPVGPPFLMNKYKLDNRPTAFKIISPLPAGLAN
VATLKEYFSSYGDLSAVELEDEPSDYDGVGSETLKNCSACVTFTTRRSAERAFLNGKCWQ
GKNLKFAWLTSSTSSNEPGSGQNSFAPNCLVDTDQSVEKLACLDSQEASASGNGGPENSE
INNGTGPIELHEALQCHSASILGEAESPKCEPSPTSISHEKESTKKDPSQTAMSEKETPE
GIVW
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtttcaacactaaagacaggtggtctttctcctgctgattgcattagc
gatcctgaggagaaggaagtcagtgatgaggatgatgatgatcgcaaccataagcatcgt
agacgggagatacgttctcaatctttggagagagattctctggaaccagttttcacaagg
ccatacaggaagcgtaacaaaccatttgaaaatgggcaattttaccaggaaaatgactat
aactctgttcctcttgagaaaggctttgccacaaagtttgaaagaatacgacctggcttg
gtgtcattacctcgaatgcctgtggattggaatcaaagaatcaggtcaaaccaaacattt
tatggagatcctggtcttggcaggggaagaggaagggagcctgtttcttggagccaacat
gattctaggttcagcccagttgacattgcttctcaaatggttcaccaggggcagagcctc
tttactgggaggggtttggcaaatgtttcaaatgcgcagagtgcatcctggaatgcatat
ggtttatttccaggaataccaaatggtggcctggataaactccgtcccattggtttgcaa
gcaactctcagaccagcagtaacttcttcattgaacatgggcattcctcaacaaaggtgt
agagactttgaggagcgtggattttgtctaagaggggacatgtgtccaatggagcatggt
gtcaatcgtattgttgttgaagatgttcagagcctttcacagtttaatctccctgtttca
cttccacgtgcccaactagttggaacaactgctagaccgggggctctaccaactgttggt
gccccttcagccacattgataaatagcaaaggaatgcatagcaaatgtaacaagcctgga
atagtcaatgctggattgggcttcaatggtgcacatactggttctgctagtgtgagtgga
ggagacttgtatgatccagatcaacccctgtggaatgacagtgttcctgaaacttcaagt
gcactcatagcaccacattcacctaaaattgatgaaattgaatccatgataagtattgat
tcttttgatcacaatcatgtcagtttacgtggtggtgctgataatgaatgcccaattaga
agcactgggattgctgtgcattcagagagtttgaattcttctgtttggggtaaagtcagg
gcttcgaacaatagattacatgtgaaagagaaaaccgatttgactgtaagtatgttaaat
aatatggagagtgagtccaaggaaaatcagggtgcattagccaatgttcgtggtacttcc
cgtcaaggaaaacaaattaattttgaggattctagcgcaaaaaccatagattcacctgcc
aagacacaaagcaacaccatgcgccacacaccaaaaccatctcaaaaggcactgcgtaca
ctatttgtcaatggcattccacagaaaagcaacaaaagagaggctctactttctcatttt
caaaaatttggagaggttattgacatttatattccattgaacactgagcgagcatttgtt
caattctcaaaaagggaagaggcagaagctgctctaagggcacctgatgctgtaatgggc
aaccgttttatcaggctgtggtgggctaatcgtgatagcattcctgatggtggcgctggc
agtagcaatagtgtatctgtcacaccccggggtgtgacttctacttcatttccaccccat
ctgcctattggtaacagtggaaaagataatcttcagttgtctgtttcaaaggctactgct
gttcctccctctgttgctcctgtccctgccatcgatcactctaaggtcatcacgacaaat
gttccaaaggttccacctcctatgcagaagctagagagtttagaacaattgaaggaggag
ctgcgcaagaagcaggagctgctggatcagaagcggaatgactttcggcgtcagttggac
aagcttgagaaacaagctacaggagtcaagggtgaggtaacagcagagcctgcttcaaag
agacacaaaactggaataccagcatctgatattgtcaaagctgctactccgaggtctgct
gatccaggttctgcgtccccacatgctgaaatggtggataagaacaaaacagtggagaat
gttgtgtcatctagtagcaaaacatgtgtaatgatggctctgcaggattctgcaggctca
aagccatcaattcatcctttagcacctgttgggcctccttttctgatgaataaatacaag
ttggacaaccgacctacagcattcaaaattatttcacctttaccagctggtttggcaaat
gttgctactttaaaggaatatttctcatcatatggcgatctttctgctgtggaactagaa
gatgagcctagtgattatgatggtgttggatctgagacactgaaaaattgttcagcttgt
gtgactttcacaactcgccgatcagctgagagggctttcctaaatggtaaatgttggcaa
ggcaagaatttgaagtttgcgtggctgacatctagcacttctagcaatgagccgggaagt
ggacaaaattcatttgctcccaattgtcttgtagatactgatcagtctgttgaaaaacta
gcttgtttggattcccaggaagcttctgcatcaggaaatggaggaccagaaaattcagag
ataaataatggtactggccccatagagttgcatgaagctctccagtgccattcagcctca
atattaggtgaggcagagtcaccgaaatgtgagcctagtccaacatcaatatctcatgag
aaagagtcaacaaaaaaggaccctagtcaaactgcaatgtcagagaaagagacccccgaa
ggcattgtctggtga
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