Populus trichocarpa (black cottonwood): 7488026
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Entry
7488026 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC7488026
KO
K08518
syntaxin-binding protein 5
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7488026
Membrane trafficking [BR:
pop04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
7488026
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
7488026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
Beta-prop_THOC3
ANAPC4_WD40
WD40_Prp19
Beta-prop_VPS8
WDR55
Beta-prop_WDR5
PEP5_VPS11_N
Synaptobrevin
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_HPS5
Beta-prop_TEP1_C
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_like
KNTC1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
7488026
NCBI-ProteinID:
XP_024463072
LinkDB
All DBs
Position
8:complement(4253087..4263819)
Genome browser
AA seq
1126 aa
AA seq
DB search
MFSKLFQKHTAQQQPPSPQQQPPPQPQSPPAKDNVSKGGLTLKDINPRIALHYGIPSTAS
VLAFDHIQSLLAIGTLDGRIKVIGGDSIEGLLVSPKTLPFKYLEFLQNQGILVSVSSDNE
IQVWDLEQRQIASTLQWDSNITAFSVIFASSYMYIGDEYGMVYVLKYDAEEVKLVQMPYH
VPADVAEVPDASGMSSPKNHSVVGVLPQPSSQGNKVLIAYEDGLMILWDVSEDKVVLVKG
NKDIELKCEITADSHKEIGHKLSDDRSDYEPLEKEIAALCWASTDGSVLAVGYVDGDILL
WNLSSTASATDKHAAKSSNDVVKLQLSTGDRRLPVIVLHWSSHRPHNECXGQLFIYGGDA
IGSEEVLTILSLDWSSGIESLKCIGRVDLTLNGSFADMVVLPSGGLMGTSGTLVLTNPGQ
LHFYNDAGLSSSTSLQETRNYVSSMQYPMVIPTIEPQLTAAKFGLVFRDGKFSKALSEAI
SARKPQATHSSGNTNWPLTGGVPSQLHDAEKYQVERLYIAGYQDGTVRIWDATFPTFALI
YVLGPEVKGINVANVNASVSALDFCSTTLCLAIGNECGTVRLYKLVCSADEMSLKFVTET
EKEVYTLDQEDGPQCTAVFSFLSSPIYALQFANSGTRLAVGFHCAQVAMLDTSTSSVLFL
TDSLSGSSLPVKSLAVFSNCIDLINNSEDTGSTIVEDHVSLKVFAMTKDACIVVMDGNNG
GILFSQSIKSATELISPSIYIIEGGSYISEMSSGKHLSVSSQKSDTKSESAPAASCSESS
PLKVDHEASAKAARFKQREENFLLLFCCEDALHLHSLNEVDSDPIRKVNLMKPCCWSAPF
KKDDKECGIILLYQTGEIEIRSLPDLEVVVESSLMSILRWNFKTNMEKTICPSENAQIIL
VNGCEFAAISLLASENHFRIPESLPCLHDKLLTAAADATISLSPNQKITQGASSGILGGL
IKGFPGSKAEHHVDLLEVCKNDFAHLESIFSSPPFLKPSIDHADGQKVVELSIDDIDIDE
PLFVSPSSETKKNDTKDKGTERERLFEGASTDSQPKLRTADEIKAKYRKGDASAAAALAK
DKLIQRQEKLERLSERTAELQSGAENFASMANELAKQMEKRKWWNI
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgttttccaaactctttcaaaaacacaccgcacaacaacagccaccttcaccacagcaa
caaccaccaccgcaaccgcaatcaccacctgcaaaggataatgtgtcaaagggagggttg
acactgaaagatataaatccacggattgctctacactatgggatcccttctactgcgtct
gttttagcttttgatcacattcaaagccttttagcaattggaacactggatggaagaata
aaagtgatcggtggtgatagcatcgaaggacttcttgtttctccaaagacattaccattc
aaatacttagagtttctacaaaatcaaggtatcctagtcagcgtgtcaagtgacaatgag
attcaggtttgggatttagagcaaagacaaattgcttccactttacaatgggactccaat
ataactgcattctctgttatttttgcctcaagttacatgtatattggagatgagtatggg
atggtgtatgtattgaagtatgatgccgaagaagttaaacttgtacagatgccataccat
gttcctgcagatgtagcagaggtgccagatgcatctggtatgtcatcacctaagaatcat
tctgttgtaggagttctgccccaaccttcttctcaaggaaacaaagtgttgattgcatat
gaggatgggttgatgattctttgggatgtctctgaagataaagttgttctagttaaaggg
aacaaagatattgaattgaaatgtgaaataacagctgattctcacaaagaaataggacac
aagctttctgatgatagatcagactatgagccattggagaaagagatagctgccctctgt
tgggcatctactgatgggtcagttcttgctgttggttatgttgatggagatatattgttg
tggaacctatcaagtactgcttctgctacagataagcatgctgcaaaatcatcaaacgat
gttgttaagctacagttatccacaggtgacagaagactccctgtcattgttttgcattgg
tcttcacacagaccgcataatgagtgttgaggccagctctttatctatggtggtgatgca
attggatctgaagaagttctaacgattttgagccttgattggtcttctggaatagaaagt
ctaaaatgcattgggcgtgttgatcttactctgaatggttcttttgctgatatggttgtt
ttacctagtggtggcttgatgggaacttcaggcactttggtattaactaatccaggacag
ctgcacttttataatgacgctggcttgtcttcctcaacatccctacaagagacaaggaat
tatgtttcttcaatgcagtaccccatggttatacctactatcgaaccacaattgactgca
gcaaaatttggtctggtctttagagatggcaagttctcaaaggctctttctgaggcaatt
tctgctagaaaacctcaagcaacacattcttctggaaatacaaattggcctttgactggt
ggagttcctagccaacttcatgatgctgaaaaatatcaggtcgagagattatatatagct
ggttaccaagatggaactgtaagaatatgggatgccacctttccaacatttgcactcatt
tatgttttaggaccggaggtcaaaggtatcaatgttgctaatgttaatgcatcagtatct
gctttggatttttgctccactaccttatgtttagctattggcaatgagtgtggtacggtt
cgtctatataagcttgtatgtagtgctgatgagatgagtttgaagtttgtgacagaaact
gaaaaggaagtctacactctggaccaagaggatggacctcaatgtacagctgtattttct
ttcctaagttctcctatatatgcattgcaatttgcaaattctggaaccagacttgctgtg
ggatttcattgtgcccaggtagcaatgcttgacactagtacatcatctgttttatttctc
acggacagtctatctggctccagtttgcctgtcaagtctctggctgtgttttcaaattgt
attgacttaataaataattcagaagacactggatccacaattgtggaagatcatgtaagt
ttgaaagtgtttgcaatgaccaaagatgcctgtattgttgtcatggatggaaacaatggt
ggtattctcttctcccaatcaataaaatctgcaacggaacttatctcaccttcaatatat
attatagagggtggcagctacatctctgaaatgtctagtggaaaacatttatctgtttca
tctcagaaaagtgacactaaaagtgaatctgccccagctgcttcttgcagtgaaagttct
ccacttaaagttgaccacgaggcctctgctaaagcagcccgctttaagcagagagaagaa
aattttcttcttttgttttgttgtgaggatgcattgcatttgcattctttgaatgaggtg
gacagtgatcctattcgaaaggtaaatctcatgaaaccatgctgttggagtgcaccattc
aagaaggacgataaagagtgtgggatcattttactctatcagaccggagagattgaaatt
agatctttgccagatcttgaagtggttgtagaaagctctttaatgtcaatcctaaggtgg
aacttcaagactaatatggagaagacaatatgtccatctgaaaatgctcagattattctg
gtgaatggatgtgaatttgctgctatatcgcttttggcctctgaaaaccacttcaggatt
ccagagtcattgccttgccttcatgataaactacttacagctgctgctgatgccacaatc
agtttatctcccaatcagaagataacacagggtgcttcctctggtattttaggtggtttg
attaagggtttcccagggagcaaggcagagcaccatgtagatcttcttgaagtttgtaag
aatgattttgctcatttagagagcatattttccagccctcctttcttaaagccttctatc
gaccatgcggatggccaaaaagttgtggagcttagcatagatgacattgatattgacgaa
cctctatttgtctcaccttcatctgaaacgaagaagaatgatactaaagataagggaaca
gaaagggaaagattatttgaaggtgcaagtactgattcacagccaaagctcagaacagcc
gatgaaattaaggctaaatataggaagggggatgcctctgctgcagctgcacttgcaaag
gacaagctcatacaacgccaggaaaaacttgagaggctcagtgagcgtacagcggagctg
caaagtggggccgaaaactttgcatcaatggcaaatgaacttgccaagcaaatggagaaa
cgcaaatggtggaacatatga
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