Populus trichocarpa (black cottonwood): 7488070
Help
Entry
7488070 CDS
T01077
Name
(RefSeq) prolycopene isomerase, chloroplastic isoform X1
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00906
Carotenoid biosynthesis
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
7488070
Enzymes [BR:
pop01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
7488070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
FAD_oxidored
GIDA
Thi4
HI0933_like
GDI
Pyr_redox_2
FAD_binding_3
GMC_oxred_N
MCRA
Motif
Other DBs
NCBI-GeneID:
7488070
NCBI-ProteinID:
XP_024443043
LinkDB
All DBs
Position
16:complement(4614779..4620201)
Genome browser
AA seq
619 aa
AA seq
DB search
MSLGFKNSLFFGQFNTVQLGSSKSRSQKHRILSIEPVRTSVLDGYIVPRNIKGKIDNLGK
VKLNKDFVLRSKSVLTVDKEVDVDGNGGLGRERSNYDAIVIGSGIGGLVAATQLAVKGAK
VLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDP
TTVHFHLPNDLSVQVHREYIDFISELAAKFPHEKDGILKFYGECWKIFNALNSLELKSLE
EPIYLFGQFFQKPLECLTLAYYLPQNAGDIARKYIKDPQLLSFIDAECFIVSTVNALQTP
MINAAMVLCDRHFGGINYPVGGVGGIAKSLSKGLVDQGSEILYRANVTNIILEHGKAVGV
RLSDGREFFGKTIISNATRWDTFGKLLKGETLPKEEENFQKVYVKAPSFLSIHMGVKAEV
LPPDTDCHHFVLEDDWARLEEPYGSIFLSIPTILDSSLAPEGHHILHIFTTSSIEDWEGL
STKDYEAKKKVAADEIISRLEKKLFPGIRSSIAFMEYMESWQVGSPKTHRRYLARDKGTY
GPMPRRTPKGLLGMPFNTTAVDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGIEKK
SPVLDAALLRLLGWLRTLA
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaggattcaagaattccctattttttggccagttcaatactgtccagttagga
agttccaaatccagaagccaaaaacataggattctgtctatagaacctgtccgaacctca
gttctcgatggttatattgtacccagaaacataaaaggcaaaattgacaatcttggtaaa
gtaaagttgaataaggactttgttttgaggtcaaagtcagtgttgactgtggataaagag
gtggatgttgatggaaatggagggttgggcagagagaggagcaattacgatgcaattgtt
attgggtctggtatcggtgggttggttgctgctacacagttggcagtgaagggagctaaa
gttttggtcttggagaagtatgtgattcctggtgggagttctgggtattatgagagggat
ggatatacttttgatgttggctcttctgttatgtttggtttcagtgataagggcaaccta
aatttgataacacaggcattggcagcagttggctgtgaaatggaggtgattcctgaccca
actactgtccattttcatctacccaatgacctttctgttcaagttcacagagagtacatc
gacttcatctcagaacttgctgctaaatttccccatgaaaaggatgggatccttaaattc
tacggtgaatgctggaagatattcaatgccttgaactctctggaactgaagtcacttgag
gagccaatctacctgtttggacaattttttcagaaacctcttgaatgcttgacactggct
tattatctacctcaaaatgctggagatattgctcgaaagtacataaaggatcctcagtta
ttgtctttcattgatgcagagtgtttcatagtgagcacagtcaatgctttgcagactcca
atgatcaatgcggccatggttctatgtgataggcattttggagggatcaattaccctgtt
ggtggggttggtggaattgcgaagtccttatcaaaaggtctggttgatcagggcagtgaa
atactttacagggcaaatgtgaccaacatcattcttgagcatggaaaggctgtaggagta
aggctttcagatggaagggagttctttggaaaaaccataatctcaaatgctactagatgg
gataccttcgggaagttgttaaaaggagaaacccttccaaaagaagaagaaaatttccaa
aaagtttatgttaaggctccatcttttctttccattcatatgggtgttaaagccgaggtt
ctaccaccagatacagattgccaccactttgtgcttgaggatgactgggcaagattagag
gagccttatggaagcatatttctaagcattccaactattcttgattcgtcattggctccg
gaaggccatcatatacttcacatatttacaacatcttccattgaagactgggagggactc
tcgacaaaggactatgaggccaagaagaaggttgcggctgatgagattataagcagattg
gagaagaaactttttccagggatcagatcatcaattgctttcatggagtacatggaatcc
tggcaggtgggttcacccaagacacacaggcggtacctggctcgtgataagggtacttat
ggacccatgccacgcagaactcctaaaggtttattgggaatgccattcaatacgacagct
gtagatggtctttactgtgttggcgatagctgctttccaggacagggcgtgatagctgta
gctttttcaggagtaatgtgtgctcatcgagtagctgctgatattggcattgagaaaaag
tctcctgtactggatgctgctctccttcggcttcttggctggttaaggaccttggcatga
DBGET
integrated database retrieval system
