KEGG   Populus trichocarpa (black cottonwood): 7488853
Entry
7488853           CDS       T01077                                 
Name
(RefSeq) RNA-binding protein 1
  KO
K14411  RNA-binding protein Musashi
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    7488853
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7488853
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     7488853
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 PHM7_cyt type_II_gspD_N0 Nup35_RRM_2 TA0956 HSP90
Other DBs
NCBI-GeneID: 7488853
NCBI-ProteinID: XP_052302969
LinkDB
Position
14:complement(714304..716388)
AA seq 556 aa
MDVEERKLFVGGIPRGTSEDTLRDHFSKYGVVSHLLVAKDQITKLPRGFAFVVFSEAASA
ARALQDSHVICGRTVEVKKAIPKTEKHQEHRQRHPHGNQETASNGSGMNSDNSTGNVNYY
RTKKIFVGGLSSSLTDEQFRNYFEKFGRTVDAIVMQDSSNKPRSFGFVTFDSEESAAKVM
RNSFHELNGKTVEVKKAVPKDRVNGDIGSCSSNGFADKGPEPENHPFYGSTHDPHYTPFL
MYDGVRGYFYGMSFYGGVYPMVGFGRPVLGVSPMVPTIPFMPAAGPFPYNNACLYLAYMH
DASSTWAMEVVGHNQIVEPGVNGEVDVVHDSNVHVPSNATTPPSEEGNVGSESFGLKGGD
VDAVHDSNGHVVPGMNGEEVGGCNQVVEPGVNGEVDVVRDSNGHVPSNATAPESEEGKVG
SGLKGGDMDAVPDNNGHVEPGVNGEVDAVHDSNGHVPSNATAPPSEEGKVGSDAFGLKGG
DVDAVPDINGHFEPDVNGEEVGGYNQIVEPDVNGEVEAFGDSNGHVPSNATAPPSEERKV
GSDALGYQGSNDGLPR
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggatgttgaggaaaggaagctttttgtgggaggtataccgcgagggacgagcgaggac
actctaagagatcacttcagtaaatacggtgtcgtttcgcatttactcgtggccaaggac
caaatcactaaattaccaagagggtttgcttttgttgtgttctctgaagctgcttctgct
gctagggctcttcaagatagccatgttatttgtggaagaacggtagaagtgaagaaagca
atacccaaaactgaaaaacaccaagagcaccggcagcgccacccccatggtaaccaggaa
actgctagcaatgggtcggggatgaatagtgataatagtactggcaatgtaaattattat
aggactaagaagatatttgtgggaggtttatcatctagtctaactgatgaacaatttaga
aattactttgaaaagtttggtaggacggtagatgcaattgtgatgcaggatagttcaaac
aagcctaggagctttgggtttgtcacctttgattccgaggaatctgctgccaaggttatg
cgcaacagttttcatgagttgaacggtaagacagtggaggttaagaaggctgtgccaaaa
gatagagtaaatggtgatattggtagctgtagttcaaatggcttcgctgataaaggtcct
gaacctgaaaatcaccctttctatggttcgacacacgacccacattatactccttttctg
atgtatgatggtgttcgtgggtatttttatggaatgagtttctatgggggtgtgtatcct
atggtaggattcggaagacctgttttgggtgtttcaccaatggtccctactatcccattc
atgcctgcagctggaccgtttccttacaacaatgcctgtctttatcttgcttacatgcat
gatgcgagtagcacttgggctatggaggttgttgggcataatcagattgttgagcctggt
gtgaatggtgaagtggacgtggttcatgacagcaatgttcatgttccatctaatgccaca
acacctccgagcgaagagggcaatgttggaagtgaatcttttggtttaaaaggtggtgat
gtggatgcagttcatgacagcaatggacatgttgtgcctggtatgaatggtgaagaggtt
ggtgggtgtaatcaggttgttgagcctggtgtgaatggtgaagtggacgtggttcgtgac
agcaatggacatgttccatctaatgcaacagcacctgagagtgaagagggcaaggttgga
agtggtttaaaaggtggtgatatggatgcggttcctgacaacaacggacatgttgagcct
ggtgtgaatggtgaagtggacgcagttcatgacagcaatggacatgttccatctaatgca
acagcacctccaagtgaagagggcaaggttggaagtgatgcttttggtttaaaaggtggt
gatgtggatgcggttcctgacatcaatgggcattttgagcctgatgtgaatggtgaagag
gttggcgggtacaatcagattgttgagcctgacgtaaatggtgaagtggaagcctttggt
gacagcaatggacatgttccatctaatgcaacagcacctccgagtgaagagcgcaaggtt
ggaagtgatgctctgggttaccaaggtagtaatgatgggttaccaaggtag

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