Populus trichocarpa (black cottonwood): 7488853
Help
Entry
7488853 CDS
T01077
Name
(RefSeq) RNA-binding protein 1
KO
K14411
RNA-binding protein Musashi
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7488853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7488853
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7488853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
PHM7_cyt
type_II_gspD_N0
Nup35_RRM_2
TA0956
HSP90
Motif
Other DBs
NCBI-GeneID:
7488853
NCBI-ProteinID:
XP_052302969
LinkDB
All DBs
Position
14:complement(714304..716388)
Genome browser
AA seq
556 aa
AA seq
DB search
MDVEERKLFVGGIPRGTSEDTLRDHFSKYGVVSHLLVAKDQITKLPRGFAFVVFSEAASA
ARALQDSHVICGRTVEVKKAIPKTEKHQEHRQRHPHGNQETASNGSGMNSDNSTGNVNYY
RTKKIFVGGLSSSLTDEQFRNYFEKFGRTVDAIVMQDSSNKPRSFGFVTFDSEESAAKVM
RNSFHELNGKTVEVKKAVPKDRVNGDIGSCSSNGFADKGPEPENHPFYGSTHDPHYTPFL
MYDGVRGYFYGMSFYGGVYPMVGFGRPVLGVSPMVPTIPFMPAAGPFPYNNACLYLAYMH
DASSTWAMEVVGHNQIVEPGVNGEVDVVHDSNVHVPSNATTPPSEEGNVGSESFGLKGGD
VDAVHDSNGHVVPGMNGEEVGGCNQVVEPGVNGEVDVVRDSNGHVPSNATAPESEEGKVG
SGLKGGDMDAVPDNNGHVEPGVNGEVDAVHDSNGHVPSNATAPPSEEGKVGSDAFGLKGG
DVDAVPDINGHFEPDVNGEEVGGYNQIVEPDVNGEVEAFGDSNGHVPSNATAPPSEERKV
GSDALGYQGSNDGLPR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgaggaaaggaagctttttgtgggaggtataccgcgagggacgagcgaggac
actctaagagatcacttcagtaaatacggtgtcgtttcgcatttactcgtggccaaggac
caaatcactaaattaccaagagggtttgcttttgttgtgttctctgaagctgcttctgct
gctagggctcttcaagatagccatgttatttgtggaagaacggtagaagtgaagaaagca
atacccaaaactgaaaaacaccaagagcaccggcagcgccacccccatggtaaccaggaa
actgctagcaatgggtcggggatgaatagtgataatagtactggcaatgtaaattattat
aggactaagaagatatttgtgggaggtttatcatctagtctaactgatgaacaatttaga
aattactttgaaaagtttggtaggacggtagatgcaattgtgatgcaggatagttcaaac
aagcctaggagctttgggtttgtcacctttgattccgaggaatctgctgccaaggttatg
cgcaacagttttcatgagttgaacggtaagacagtggaggttaagaaggctgtgccaaaa
gatagagtaaatggtgatattggtagctgtagttcaaatggcttcgctgataaaggtcct
gaacctgaaaatcaccctttctatggttcgacacacgacccacattatactccttttctg
atgtatgatggtgttcgtgggtatttttatggaatgagtttctatgggggtgtgtatcct
atggtaggattcggaagacctgttttgggtgtttcaccaatggtccctactatcccattc
atgcctgcagctggaccgtttccttacaacaatgcctgtctttatcttgcttacatgcat
gatgcgagtagcacttgggctatggaggttgttgggcataatcagattgttgagcctggt
gtgaatggtgaagtggacgtggttcatgacagcaatgttcatgttccatctaatgccaca
acacctccgagcgaagagggcaatgttggaagtgaatcttttggtttaaaaggtggtgat
gtggatgcagttcatgacagcaatggacatgttgtgcctggtatgaatggtgaagaggtt
ggtgggtgtaatcaggttgttgagcctggtgtgaatggtgaagtggacgtggttcgtgac
agcaatggacatgttccatctaatgcaacagcacctgagagtgaagagggcaaggttgga
agtggtttaaaaggtggtgatatggatgcggttcctgacaacaacggacatgttgagcct
ggtgtgaatggtgaagtggacgcagttcatgacagcaatggacatgttccatctaatgca
acagcacctccaagtgaagagggcaaggttggaagtgatgcttttggtttaaaaggtggt
gatgtggatgcggttcctgacatcaatgggcattttgagcctgatgtgaatggtgaagag
gttggcgggtacaatcagattgttgagcctgacgtaaatggtgaagtggaagcctttggt
gacagcaatggacatgttccatctaatgcaacagcacctccgagtgaagagcgcaaggtt
ggaagtgatgctctgggttaccaaggtagtaatgatgggttaccaaggtag
DBGET
integrated database retrieval system