Populus trichocarpa (black cottonwood): 7488893
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Entry
7488893 CDS
T01077
Name
(RefSeq) DNA repair protein RAD51 homolog 3 isoform X1
KO
K10870
RAD51-like protein 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03440
Homologous recombination
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
7488893
03460 Fanconi anemia pathway
7488893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7488893
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecA family proteins
7488893
FA (Fanconi anemia) pathway
Other FA pathway factors
7488893
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rad51
ATPase
AAA_25
DnaB_C
AAA_24
RecA
DUF7271
Motif
Other DBs
NCBI-GeneID:
7488893
NCBI-ProteinID:
XP_024440486
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All DBs
Position
14:4301350..4305066
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AA seq
349 aa
AA seq
DB search
MDGLDGSNAILQQEQQQQSLNPKDWIAVDPQNAWDLLHEERSLMTRLTTSCADLDDILGG
GISCKQVTEIGGVPGIGKTQLGIQLAVNVQMPSFCGGLGGKAIYIDTEGSFMGERAQEIA
EACVEDISEYKRFLHKDSQACQGEIQGKDVLQNIYFFRICSYTEQIALINYLEEFISDHK
DVKIVIIDSVAFHFRQGFEDLALRTRILGEMALKLVKLAKMCNLAVVLLNQVTTRYMEGS
FQLSFSLGDRWSRCCTNRIILYWNRNERYAYIDKSPYLRPAAAPYSVTGRGIRNSAPHCK
RTSYHETKAVLINSSPVLITVWTHFLNCNLELSDRDYFFKISENTKKKE
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggatggattggatggaagcaatgctattctacaacaagaacaacaacaacaaagcctc
aatcccaaagactggattgcagttgatccacaaaatgcctgggatctgcttcatgaagag
aggtctttgatgacacgccttaccacatcttgtgcggatttggatgacatcctaggtgga
ggaataagttgcaaacaagttacagaaattggtggagtaccaggcattggtaaaacacag
ctggggatccaacttgctgtcaatgttcaaatgccatctttttgtggtggcctaggagga
aaggcaatttatatagatacagaaggtagttttatgggagagcgtgctcaagaaattgct
gaagcatgtgtagaggacatttcagaatataaaaggttcttacacaaggattcgcaagcc
tgccaaggtgaaatccagggcaaggatgtcctacaaaatatatactttttccgcatctgc
agttatacagagcaaattgccctgataaattacttggaagagttcatttcagatcacaaa
gatgttaagattgttatcattgatagtgttgctttccacttccgtcaaggttttgaagac
ctggccctcaggacccgaatacttggtgaaatggcattaaagcttgtgaagcttgcaaaa
atgtgcaatttagcggtggttttattgaatcaagtgacaactaggtacatggaaggttcc
ttccaattatcattttcattgggtgataggtggtcacgttgttgcactaatcggatcatt
ttgtactggaacagaaatgaacgatatgcatacattgacaagtcaccttaccttagacca
gcagcagcaccttattctgtgactggtagagggatccgaaattctgctccgcactgtaaa
cgtacatcatatcatgaaacaaaagcggttctcatcaactcaagtccagttttgatcact
gtttggactcatttcctgaactgcaacctggagttgtcggacagagattatttttttaaa
attagtgaaaacacaaaaaaaaaagagtaa
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