Populus trichocarpa (black cottonwood): 7488937
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Entry
7488937 CDS
T01077
Name
(RefSeq) SNW/SKI-interacting protein
KO
K06063
SNW domain-containing protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7488937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7488937
Spliceosome [BR:
pop03041
]
Complex B
Other components
Prp19-related factors
7488937
Complex C
7488937
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SKIP_SNW
Motif
Other DBs
NCBI-GeneID:
7488937
NCBI-ProteinID:
XP_002324443
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Position
18:10381735..10384420
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AA seq
612 aa
AA seq
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MAALKELLPPAKSTSATYYDHSNDPWFKQRFSSSEVEQSAGGGGINYKPVPLYLQRKGFV
PRKVEDFGDGGAFPEIHVAQYPLDMGRNKSAKPGSKILALTVDAHGNVAYDAIVRQNENA
KKIVYSQHKDLIPKILRSEEEGDEDGDGDGDEELQKEIEDTTLETKAALEKIVNVRLSAA
QPKNVPKQSSDSKYIKYKPSQQSAAFNSGAKERIIRMVEMPVDPLEPPKFKHKRVPKASG
SPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDN
FAKLSEALYVAEQKAREAVAMRSKVQKEMMMKEKERKEQELRALAQKARSERTGAAPPPS
APVPSERGAMDDVDMRGDYEHVKDRERDAPKETREEREERLRREKIREERRRERERERRL
EAKDAAMGKKSKITRDRDRDISEKVALGMASTGAGKGGEVAYDQRLFNQEKGMDSGFAAD
DQYSVYDKGLFTAQPTLSTLYRPKKDVDAEMYGGADEQLDKIMKTERFKPDKEFAGTSQR
TGPRDRPVEFEKDEEEADPFGLDQFLTEVKKGKKPTDKVGTGGTMRASAGSSMRDGHDGG
SGRTRIGFERGR
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggcggctttaaaggaattactgcctccggcgaaatcaaccagcgcaacttattatgat
cattcaaatgatccgtggttcaagcagaggtttagttcatctgaggttgaacaatctgct
ggtggtggtgggatcaattataaacctgtacctctttacttgcagcggaagggttttgtt
cccaggaaagttgaagattttggagatgggggtgcgtttccagagattcatgttgcgcag
taccctcttgatatgggtaggaataagtctgcgaaacctgggtccaagattttggctttg
actgttgatgctcatgggaatgttgcgtatgacgctattgtgagacagaatgagaatgct
aagaagattgtgtattctcagcataaggatttgattccgaagattttgaggagtgaggaa
gagggagatgaggatggggatggggatggggatgaggaattgcagaaagagatcgaggac
actacgctggaaactaaagctgcgcttgaaaagattgtgaatgtcagattgagtgcagcg
cagccgaagaatgtgcccaaacagtcttcggattccaagtatataaagtacaagccttcg
caacagtcggcagcgtttaactcgggtgcaaaagagaggattattagaatggtggagatg
ccggtggacccgcttgagccacctaagttcaagcataagagggttccaaaggcatcggga
tcaccacctgtgccagttatgcactcgccacctcgacctgtgaccgtgaaggatcagcag
gattggaaaatcccaccttgtatctcaaattggaagaaccctaagggctacacgattcct
cttgataagcgtctggctgctgatggaagaggtttgcaggatgttcaaattaatgataat
tttgctaagctgtcagaagccctttatgttgctgagcaaaaggctagagaagctgttgct
atgagatccaaggttcaaaaggagatgatgatgaaggagaaggaaaggaaagagcaggag
ttgcgggcattagctcagaaagctcgttctgagagaactggtgctgcacccccaccgtct
gctccagtcccatcagagaggggtgcaatggatgatgttgacatgagaggggattatgag
catgtgaaggacagggagagggatgccccaaaggagacaagggaagagagggaagagagg
ctgcggcgcgagaaaattcgagaggagcgccgtcgagaaagggagagagaaagaagattg
gaagcaaaagatgctgcaatgggtaagaagagcaagatcactagagatagagatcgtgac
atcagcgagaaggttgctcttggtatggcctctactggagctggaaaagggggagaagtt
gcatatgatcaaaggttgttcaaccaagagaaaggaatggattctggttttgctgctgat
gatcaatacagtgtgtatgataaaggccttttcacggctcagcccacactttcaactcta
taccggccgaagaaagatgttgatgctgaaatgtatggaggcgcagatgagcaattagat
aagataatgaagacagaacgattcaaacctgacaaggaatttgctggtacttcacagagg
accggtccacgtgacaggccagttgagtttgagaaggatgaagaagaagctgatccattt
ggtctggatcagttcttgactgaagtaaagaagggtaagaaaccgacagacaaagttggt
actggtggcacaatgagagctagtgcaggatcttcaatgcgagatggccatgatggaggc
tctggtagaactcgtattggatttgagagagggcgttag
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