Populus trichocarpa (black cottonwood): 7488958
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Entry
7488958 CDS
T01077
Name
(RefSeq) adagio protein 1
KO
K12115
clock-associated PAS protein ZTL
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
7488958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7488958
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
7488958
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Kelch_4
Kelch_3
Kelch_2
Beta-prop_ATRN-LZTR1
Kelch_5
Kelch_6
Kelch_1
PAS_9
F-box-like
PAS
PAS_3
NANM
F-box
PAS_4
Motif
Other DBs
NCBI-GeneID:
7488958
NCBI-ProteinID:
XP_002324465
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Position
18:11130374..11138059
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AA seq
613 aa
AA seq
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MEWDSDSDLSGEEDEEGFMLNDGGGGPLPFPVENLLQTAPCGFVVTDALEPDHPLIYVNT
VFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNF
RKDGSPLMNRLRLTPIYGEDDTITHVIGIQFFTEANIDLGPVPGYSVKESSKLADKFRSG
FSTYRPIPVGDRNVSRGICGILQLSDEVLSLKILSRLTPRDIASIGSVCRQLYELTKNED
LWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARELTTLEAATWRKLTVGGSVEPSRCNF
SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGS
HLVVFGGCGRQGLLNDVFILDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGC
ADSGVLLSDTFLLDLSMEKPIWREIPVSWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLR
FRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPSGIAPPPRLDHVAVSLPGGRILIFGGSV
AGLHSASQLYLLDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWML
SELHELSLASSAT
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggatagcgattcggatctgagcggggaggaagatgaggagggattcatgtta
aacgacggaggaggaggtcctttgccttttcctgtcgagaatttgctgcaaactgctcct
tgtggatttgttgtcactgatgctcttgaacctgaccatcctcttatttatgtcaacact
gtttttgagatggttactggctatcgagctgaggaagttcttggccgtaattgccgtttc
ttgcaatgcagaggaccatttgctaaacgaaggcatccattggtcgactccacagtggtt
tcggaaataagaagatgcctcgaagagggcattgaattccaaggtgagttgttaaacttc
agaaaagatggatctccactgatgaacaggctgcggcttactcctatatatggggaggat
gacacaattactcatgttattggaatccagttcttcaccgaagctaatattgatctaggt
cccgtgcctggttattcagtaaaggagtcttcaaaattggctgataagtttcgttctggt
ttttccacctatcgtccaatcccagtaggtgatcgtaatgttagccgtggcatctgtggg
atactgcaattgagtgatgaggtactgtctcttaagatactttcacgtttgactccaagg
gatattgcttcaattggttctgtctgcagacaactctatgagctgacaaagaatgaggat
ctctggagaatggtctgtcagaatgcttggggtagtgaaacaactcgagttctagagact
gtgcctggtgcaaagagacttggctggggtcggcttgctagggaattgacaactcttgaa
gcagcaacatggagaaagctaaccgttggaggttctgttgaaccctcaaggtgcaatttc
agtgcttgtgcagttggtaatcgagttgtactttttggtggggagggtgttaacatgcag
ccaatgaatgatacctttgtcctggatctgaactccagtaacccagagtggcaacatgtc
catgtgagctcccctcctcctggtcggtggggacatacactttcttgtgttaatgggtct
catttggtggtttttggaggttgtggaaggcaaggtctattgaatgatgtctttattttg
gatttggatgccaagcctccgacttggcgtgagatttctggattggcccctccacttcca
cgatcatggcacagttcctgcacccttgatggcactaagttgattgtctctggtgggtgt
gcagattctggagtacttcttagtgacacatttctgcttgatttgtcaatggagaagcct
atctggagggagataccagtttcatggaccccaccatctcggctaggtcacactctctca
gtttatggaggaagaaaaatattgatgttcgggggtttggctaagagcggtccccttcgg
ttccgctccagtgacgtgtttactatggatctaagtgaggaggaaccttgttggagatgt
gtaacagggagtggaatgcctggtgctggaaaccctagcggcatagctcctccacctaga
cttgatcatgtagctgtgagccttcctggtggtagaatcctgatctttggtggctctgtt
gcaggtcttcactctgcctcgcagctttatctccttgatcctactgacgagaaacctaca
tggaggattctaaatgtacccgggcgacctccaagatttgcttgggggcacagtacctgt
gttgttggagggacaagggctatagtccttggtggtcaaactggggaggagtggatgctg
agtgagctccatgaactgtctttggcaagttcagccacctaa
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