Populus trichocarpa (black cottonwood): 7488964
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Entry
7488964 CDS
T01077
Name
(RefSeq) replication protein A 32 kDa subunit B isoform X1
KO
K10739
replication factor A2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
pop03440
Homologous recombination
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
7488964
03420 Nucleotide excision repair
7488964
03430 Mismatch repair
7488964
03440 Homologous recombination
7488964
03460 Fanconi anemia pathway
7488964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
7488964
03400 DNA repair and recombination proteins [BR:
pop03400
]
7488964
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
7488964
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
7488964
MMR (mismatch excision repair)
7488964
DSBR (double strand breaks repair)
HR (homologous recombination)
7488964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPA_C
tRNA_anti-codon
RMI2
TrmB
HTH_20
DUF5818
Motif
Other DBs
NCBI-GeneID:
7488964
NCBI-ProteinID:
XP_002325047
UniProt:
B9ILY1
LinkDB
All DBs
Position
18:complement(11244639..11250683)
Genome browser
AA seq
272 aa
AA seq
DB search
MYGSSQFDGSAAAFMGGGFMPTQTAHPPSDSSSISKNREARCLFPLTVKQISNLASNNES
NFIIDGAEVNNVTIVGRVSHKEDKASEYTFLVDDGTGQIECTKWVQESLDTEQMGEILVG
MYVRVHGHLRGLQGRRFLNVFSIRPVTDFNEIPGHFIECIYVHFYNTRLQGVTSQPPVAN
STSIPLKGYQTAPPYQSSVYSSADGLNNVSQMILNFLQQPAYLNTEGAHYDVIARQLNIP
MNKLKEELQMLVDNGLVYTTINDDYYKSTVNA
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgtatgggagcagccaattcgatggaagcgccgcagccttcatgggcggcggattcatg
cctactcaaaccgctcaccctccttctgattcctcctccatctccaaaaatcgggaggcg
cggtgcttgtttccgctgactgtgaagcagataagcaacctagcaagtaataatgaatct
aatttcatcattgatggtgctgaagttaacaatgttacaattgtggggagggtatcccac
aaggaagacaaggccagcgagtacacttttttagttgatgatggaactggacagattgaa
tgtaccaaatgggttcaagaaagcttagatacagaacaaatgggggaaatcttagttggc
atgtatgttcgtgttcatggacacttgagagggctgcaaggcagaaggttcttgaatgtc
ttctccattaggcctgttactgactttaatgagattccaggccatttcattgagtgcata
tatgtccacttctacaataccaggttacagggtgtcacttctcagcccccagtagcaaat
tcaacaagtatccctttaaagggataccaaactgcccctccatatcaatcttctgtgtat
tccagtgctgatggactgaacaatgttagtcagatgatattaaatttcttgcagcaacct
gcatatctgaacaccgagggagctcactacgatgtcattgcccgtcagctaaacattcca
atgaataagctcaaggaagaactacagatgctggttgacaatggcctcgtttatacaaca
atcaacgatgattactataagtctactgttaatgcctga
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