Populus trichocarpa (black cottonwood): 7489341
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Entry
7489341 CDS
T01077
Name
(RefSeq) protein LATERAL ROOT PRIMORDIUM 1
KO
K27807
short internodes/stylish family transcription factor
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7489341
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
7489341
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GFIT
Motif
Pfam:
DUF702
DUF7500
Motif
Other DBs
NCBI-GeneID:
7489341
NCBI-ProteinID:
XP_024452930
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Position
1:complement(28981376..28984016)
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AA seq
358 aa
AA seq
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MVGLRDVFVVAPAAPFNHHHHHHHQHHEQINLSTADPINASNATALGVGVGVGVIPLLTS
APCLTPQNMDDQDLLHNGRNKISGIHQFWQNQGTQYIKKASDTTHSIIDHHNNSSTANFL
LQSGNGGGNGSGNLGGNSSSSATTTCEDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKST
WVAAARRRERQLIATAGGGAGSTGSTSGSKKPRLINSQATTTSHTSTSNTTPPRSYDTSS
SHQDAGFKERLPVQVTAPAVFRCVRVTAVEDGEDQYAYQAVVKIGGHVFKGFLYDQGVET
RDGFPNISELHLGAANGGGGGGAGRHGASSSPILDPSDVYGASAGGLLGGSAFGNPIN
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccttcgcgatgtcttcgttgtggctcctgctgctcccttcaaccaccaccac
caccaccaccaccagcatcatgagcaaatcaatctttcaacagcagatccaatcaatgct
tccaatgctacagctcttggtgttggggtgggtgttggtgtcattccactccttacatca
gcgccttgtcttacgccacaaaacatggatgatcaagatttgttgcataatggtcgaaac
aagattagtggaattcatcagttttggcaaaaccaaggcactcaatatatcaagaaagct
tctgacaccacccattcgattattgatcatcacaataattcttcaacagcgaattttcta
ctacaaagtggaaatggtggtggtaatggtagtggaaatcttggagggaattcatcatcg
tctgccacaactacgtgtgaggattgtggaaaccaagcgaagaaagattgtagccataga
aggtgcaggacgtgttgtaaaagccgtggttttgattgtgctactcatgtgaagagcacg
tgggtagcggctgcgaggaggagagagcgtcagcttatagcaactgctggtggtggtgct
ggttccacggggtctacttctggttccaagaaacctaggcttataaactctcaagctact
actacttctcatacttccacttctaatacgactcctccaaggagctacgacacgagttct
agtcaccaagatgcaggttttaaagagagattaccggtgcaagtaactgcaccagcagtt
tttaggtgtgttagagtgacagcagtggaagatggtgaagaccagtatgcgtatcaggct
gtggtgaagattggtggtcatgttttcaaagggtttctatatgaccaaggagttgaaaca
agagatgggttccctaatatatctgaattgcatttgggtgctgctaacggtggtggcggc
ggcggcgcagggagacatggggcctcttcttccccgattctcgatccttcagatgtttat
ggtgcttctgctggagggttactaggaggttcggcctttggaaatccaataaattaa
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