Populus trichocarpa (black cottonwood): 7489470
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Entry
7489470 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7489470
KO
K24755
WD repeat-containing protein 76
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7489470
03036 Chromosome and associated proteins [BR:
pop03036
]
7489470
03400 DNA repair and recombination proteins [BR:
pop03400
]
7489470
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
7489470
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
7489470
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
7489470
DSBR (double strand breaks repair)
Other DSBR factors
Others
7489470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
7489470
NCBI-ProteinID:
XP_002324565
UniProt:
B9IMI2
LinkDB
All DBs
Position
18:12983709..12992761
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AA seq
513 aa
AA seq
DB search
MATQKLTEYEIKRLENIRRNDEMLAALQLHAKASLLSNATKRSRDGSAKSYKVSPEKKPK
KAETPIVIRRSLRTRGMPPDSNCLDADSNENSDKTTLNQTSISREKPSPCVMGPLKMKDA
HDGTGSDREFIDTLLSFERKPKLGVGVKEEFDCFKVVKEEGHDRVLCGPVKRKVENDNLN
CGIKIEKREFEGCVDLGSMSLEPENIARIMPGRIMTVRFFPRNDINIVAAGNKLGNVAFW
NVDSEGEKGDGIFLYRPHTGPISGILFQQSCLSKIFTSCYDGYLRLMDAEKEVFDLVHSC
DDAIFSLSQHPNDVKSLYFGEGRGGLSVWDDRTGSVSSQWTLHEDRINTIDFNPQNPNIM
ATSSSDATVCLWDLRKVDAGKPKSLKIVNHERAVHSAYFSPSGSSLASTSFDDTVGILSG
VNFEDASRVHHCNQTGRWISSFRATWGWDDSFVYVGNMKRGVDIISPAQRRVIRTLQSPH
MTAIPCRFHAHPFRVGMLAGATGGGQVYIWTSS
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcagaaactaacagaatacgagataaagagactcgaaaacattcgaagaaac
gatgaaatgttggctgctcttcaactccacgctaaagcctctcttctttctaatgccacc
aaacgctcaagagatgggtcagcaaagtcatataaagttagtccagagaagaaacccaaa
aaagctgagactccaattgttataagacgatctttgcgtacacgaggaatgccgcctgat
tctaattgtttagatgctgattctaatgagaattctgataaaacaactcttaatcagact
tcaattagcagagaaaagccttcgccctgtgtcatgggtccgctgaaaatgaaggatgct
catgacggaactggttctgatagagaatttatagacacacttttgtcttttgaaaggaaa
cccaaattgggtgttggagttaaagaggagtttgattgttttaaggttgttaaagaggag
ggacatgatagggttttgtgcggcccagttaagaggaaggttgaaaatgataatttgaat
tgtgggattaagatagagaagagggaatttgagggttgtgttgatttgggatcgatgagt
ttggagccagagaatattgcaaggattatgccagggaggataatgacagtgagatttttt
ccgcggaacgatataaacatagttgcagctgggaataagcttggcaatgttgcattttgg
aatgtggatagtgaaggggagaaaggtgacgggatatttttgtatcgcccgcatactggt
ccaatttctgggattttgttccagcaatcttgtttatccaagatcttcaccagctgctat
gatggatatctccgtttaatggatgctgaaaaggaagtatttgatctagtacactcctgt
gatgatgctatattttctctttctcaacatccaaatgatgtgaagagcttatattttggc
gagggtcgtggaggattgagtgtctgggatgataggacaggaagtgtttcatcccaatgg
accctgcatgaagacagaatcaacaccatagatttcaatccacaaaaccctaacattatg
gccactagttcctcagatgcaacggtttgcctttgggacttgagaaaagtggatgcaggt
aaacccaaaagtttaaagattgtaaatcatgagagggctgtgcattctgcttacttctca
ccctctggaagctcacttgcaagcacaagttttgatgacacagttggtatactaagtgga
gttaatttcgaggatgcttctagggtgcaccattgtaatcagacaggtcgatggatttct
agtttcagagcaacatggggttgggatgattcgtttgtctacgttggcaatatgaaaaga
ggagttgatatcatttctccagctcaaagacgagtaatcaggactctacagagtccccac
atgactgctattccatgcagatttcatgcacatcctttcagggttgggatgctagcagga
gcaaccggtggtggccaggtttacatttggacgtcaagctag
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