Populus trichocarpa (black cottonwood): 7489675
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Entry
7489675 CDS
T01077
Name
(RefSeq) TATA-box-binding protein 2 isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7489675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7489675
03021 Transcription machinery [BR:
pop03021
]
7489675
Transcription factors [BR:
pop03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
7489675
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7489675
RNA polymerase III system
TFIIIB
7489675
RNA polymerase I system
SL1/TIF-1B
7489675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
DUF4295
Motif
Other DBs
NCBI-GeneID:
7489675
NCBI-ProteinID:
XP_002319167
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All DBs
Position
13:4326077..4340265
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AA seq
201 aa
AA seq
DB search
MAEQGGLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLELKQIALQARNAEYNPKRFAA
VIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIV
GSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRE
ETYTAFENIYPVLTEFRKVQQ
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcaaggaggcttggaaggtagccagccagtggatctctccaagcatccttct
ggcattgttcccaccctccagaacattgtttcaacagtgaacttggattgcaagctggaa
cttaagcaaattgccctgcaagcccgtaatgcagaatataatcccaagcgttttgctgca
gtcatcatgcggattagggaaccaaaaactacagcattgatttttgcctctggcaagatg
gtgtgcacaggtgccaagagcgaacagcaatctaaactggctgcgagaaagtatgctcga
attatccaaaagcttggctttgctgccaaatttaaggacttcaagattcagaatattgtt
ggctcttgtgatgtcaagttccccattagacttgaagggctcgcatactcccatggtgct
ttctcaagttatgaacctgaactctttccgggtctaatatatcgcatgaaacaaccaaag
attgtgctccttatttttgtctctggaaaaattgtgatcactggagccaaggtgagagag
gagacatacacagcctttgaaaatatataccctgtccttacagagttcaggaaagtccag
caatga
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