Populus trichocarpa (black cottonwood): 7489682
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Entry
7489682 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7489682
04121 Ubiquitin system [BR:
pop04121
]
7489682
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7489682
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
7489682
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7489682
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-C3HC4
zf-RING_UBOX
Zf_IFT144_1st
zf-ANAPC11
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
7489682
NCBI-ProteinID:
XP_002319703
UniProt:
B9I601
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All DBs
Position
13:complement(4451855..4454067)
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AA seq
344 aa
AA seq
DB search
MEDEMVDQYWCHMCSQMVNPVTEAEIKCPFCESGFLEEMGSVREVNNNIFDLGSEHAFSL
WDTFLLDLMGGLGTSGSRRIAQEHISSTSSQDEDDELDFESLLRRRGRLSTSSVQRLLQD
LHLRSENPENDRESSGGSSSSSSVILVNPFNEEAIILHSPDNMNQPENPSQNVSISFQDY
LIGPDVDLLLHHLAESGPNRYGTPPAEKEAVKAMPTVSITQNLQCSVCLEEFDIGCEAKE
MPCKHKFHGECIVPWLELHSSCPVCRFLMPSDDSTTGVSQSRSDEERTESNDARIINNGR
RYWVPIPWPFDGLFPLSGSQNGGSSSSAPSSTTMRGSASYSDET
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgaaatggtggatcagtattggtgtcacatgtgttctcagatggtgaacccg
gtaacggaagctgagattaaatgcccattctgtgagagtggttttctggaagagatgggc
agcgtgagagaagtcaataacaatatctttgatttaggatcagaacatgcattctctctt
tgggatacattcttgctggaccttatgggtggcttaggcacttctggttcacgtagaata
gctcaagaacatattagcagtaccagttcccaagatgaagatgatgagctagactttgag
tccttacttcgaagaagaggtagactaagcacatcttcagtccaacgcttacttcaagat
cttcatttgaggtcagagaatcctgaaaatgacagggagagcagcggcggcagtagtagt
agcagtagtgtgattttggtcaatcctttcaatgaagaggcaataattcttcacagtcct
gataatatgaaccaaccagaaaacccgagtcaaaacgtgtcaatttctttccaggactat
cttataggacctgatgtggatttattgctacatcatttggcagagagtggtcctaaccga
tacgggactcctccagcagagaaagaagcagttaaagcaatgccaacagtttccattacg
cagaatttgcagtgttcagtatgcttggaagagttcgacattggatgtgaagcaaaggag
atgccatgtaaacacaaatttcatggagagtgtattgttccatggctggaacttcatagt
tcctgcccagtttgcaggttcctaatgccctctgatgattccacgactggagtaagccag
tcgagaagtgacgaagagagaacggagagcaatgatgctaggatcattaataatgggaga
aggtattgggtccctatcccatggccttttgatggtttgtttcctttatcaggatctcaa
aatggtgggagttcttcatcagcaccatcatcaaccaccatgcgcggaagtgcttcctac
tccgatgaaacttga
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