Populus trichocarpa (black cottonwood): 7489857
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Entry
7489857 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP133 isoform X2
KO
K14300
nuclear pore complex protein Nup133
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7489857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7489857
03036 Chromosome and associated proteins [BR:
pop03036
]
7489857
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7489857
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
7489857
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
7489857
NCBI-ProteinID:
XP_002301581
LinkDB
All DBs
Position
2:20560916..20568034
Genome browser
AA seq
1304 aa
AA seq
DB search
MFSPGIKRSSNRKAAAAPDNNSIPNRPATGTPAPWAPRLSVLARTQLTKKSEEKASDADP
IKPVYVGEFPEVVRDEQANFLRSHIPGDASISGGMDKETCLSWIICRNRLFIWSHLSSSP
SKDCVVLQLPLDCLDDGAHSNSGYHGTNWLLCFLNWDPTSRGRNKAVQSCKSAGVVLCNQ
KTRAVTYWPDIYNEGGSVPVTCMLSSDESEVTSFSVDGKSTPNRRSAINTMGSNSFNSLI
ACARPASQHVSVALACSSNGALWRFYCTPTEIQCSKVYQDTLYLSSHGSDGSQFVRSKGY
PRSLIWRFSPHSMDDSERQFFLLTDHEIQCFSIKLNPDSNVSKMWSHEIVGTDSDLGIKK
DLAGQKRIWPLDVQVDDHGKVITVLVATFCKDRVSSSSYTQYSLLTMQYKSGVNISSDVH
ERVLEKKAPIQVIIPKARVEDEDFLFSMRLRIGGKPSGSTLIISGDGTATVSHYFRNSTR
LYQFDLPYDAGNVLDASALPSTNDGEDGAWIVLTEKAGIWAIPEKAVVLGGVEPPERSLS
RKGSSNEGSTLEERRNLTFASNVAPRRVSSEAGDSGDRKKAVMNRISRRTSHDEESEALL
GQLFHDFLLTGQVDASYEKLQSSGAFERDGETNVFTRTSKSIIDTLAKHWTTTRGAEILA
MTMVSNQLMDKQEKHQRFLQFLALSKCHEELCTKQRQSLLTIMEHGEKLSGMIQLRELQN
TISQNRSNMSGSPHSSSEAQLSGALWDLIQLVGERARRNTVLLMDRDNAEVFYSKVSDLE
EVFYCLHSYLTYLINEEQPHEAQIKRACELSNAVVSIVRSAMLYRNEHHMWYPLSQGLTS
WYCQPVVRNGLWRIASFMLQLLDGTSELELSAKSDLCAHLEVLAEVLLEAYAGAVTAKVE
RGGEHKGLLDEYWNRRDSLLNSLYKQVKYFVEGGHQVLNVRTDEPDEEILRKLTSNLLSI
SKRHEGYNTMWSICCDINDSALLRNLMHDSMGPKGGFSYFVFKQLYEKRQISKLLRLGEE
FQEELSIFLKHHRNLLWLHELFLHQFSSASETLHVLALSQDETSISEAEETTDHVQNRFI
TTLADRKRLLNLSKIAIMAGKTTDSETKMKRIEADLKILKLQEEILKVLPANEANQYDGQ
RLFRPEELIELCFKVQNPELALRGFDVFAWTSSSFRRSHRNLLEECWKNAADQDDWGQLH
QASKDEGWSDEEILQQLRDTVLFQASSSCYGPNAEIIDEGFDAVLPLRKENSGVSALEDL
DFSVEAILMQHKDYPDAGKLMLTAIMLGSVHDNSKVEENPSSME
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgttctctccaggaattaaaagatccagcaatcgaaaagcagcagcagcacctgacaat
aattcaatccctaatcgccctgccaccggcactcccgctccttgggctcctcgcctctca
gttctcgccagaactcaattgacgaaaaaaagtgaagaaaaagctagtgatgctgatcca
attaagcccgtgtatgttggagagtttccggaagtagttcgtgatgaacaagccaacttt
ctgcgcagccacattcctggtgatgcatctatatctggtggaatggataaggagacgtgc
ctttcctggatcatttgcagaaatagactctttatctggagtcacttatcatcttcacct
tcaaaagattgtgttgttcttcaacttcctttagattgtttagatgatggagctcatagc
aatagcggctatcacggcacaaattggctgctttgttttctcaactgggatcccacatcc
aggggaaggaataaagctgtacaaagttgcaagtctgctggtgtggtattgtgtaaccaa
aaaactcgagctgttacatactggcctgacatttacaatgaaggcggatctgttccagtt
acttgtatgttgtcttctgatgaatcggaggtgacttcattctctgttgatgggaagagc
acccctaatcggcggtctgcaattaatacaatgggatccaattcttttaattctttgatt
gcttgtgcacgtcctgctagccagcatgtttctgttgccttggcttgtagttctaatggt
gcgctgtggcgcttttattgcacccccactgaaattcaatgcagtaaagtgtatcaggac
acattgtatttatcctcccatggcagtgatggtagtcaatttgtcaggagcaagggctat
ccaaggtcactcatctggcggttttcaccccattccatggacgattctgaacggcagttt
tttttattgactgatcatgagatacagtgtttcagtataaaacttaatcctgattcaaat
gtgtctaagatgtggtctcatgaaattgttggcactgacagtgatttgggcattaaaaag
gatctggctggtcagaaacgcatatggcctctagatgtacaggtggatgaccatggcaaa
gtcatcacagttcttgttgccactttctgcaaggatcgtgttagcagttccagctacaca
caatattctcttctgaccatgcaatataagtcgggagtcaacatttcttctgatgtacat
gaaagggttttggagaaaaaagccccaatccaagtgataatcccaaaagcaagagtagaa
gatgaagatttcttattttctatgagacttagaataggaggcaagccttcaggctcaaca
ctaataatttctggcgatggaacagcaacagtctcccattattttaggaactctacacgt
ctctatcagtttgatctaccttatgatgcaggaaatgttctagatgcttcagcccttcct
tctacaaatgacggcgaagatggtgcatggattgtattaactgagaaggctggaatatgg
gcaataccagaaaaggctgttgtgcttggtggagttgaaccacctgagagaagcttgtcg
cgtaaagggagctcaaatgaagggtctacactagaagagagaagaaacctcacgtttgca
agcaatgttgctcctagaagggtaagttctgaagcaggggattctggtgatagaaaaaag
gctgttatgaataggatttcacgccgaacttcgcatgatgaagaatcagaggctttactt
ggtcagcttttccatgattttctgttaactgggcaagtcgatgcctcatatgaaaagctt
caaagttctggggcttttgaaagggatggagaaacaaatgttttcacccgcacaagcaaa
tcgatcattgacaccttagctaaacactggacaaccaccagaggtgctgaaattttggct
atgaccatggtatccaaccaactcatggataagcaggaaaagcatcaacgatttttacag
tttcttgctctatcaaaatgccatgaggagctatgcactaaacagagacagtctttgcta
acaatcatggaacatggagaaaaactttctggaatgattcaactgagagaactgcaaaac
acaattagccagaacaggtcaaatatgagcggctccccacattccagttcagaagctcaa
ctttcaggtgcactatgggatctaattcagttagttggtgaaagagcccgccgcaataca
gttcttctcatggacagagacaatgctgaagtgttttacagtaaggtttcggatcttgaa
gaagtattttattgcttgcacagctacttaacatacctaataaatgaagaacagcctcat
gaggctcagatcaagagggcttgtgaactctcaaatgcagttgtgtctatagttcgttct
gctatgctctatagaaatgagcaccatatgtggtatccactatcccagggcttaacatct
tggtattgtcaacctgttgtgcggaatgggctgtggagaattgcttctttcatgcttcag
ctgttagatggaacatctgaacttgaactttctgcaaaatcagatttatgtgctcatcta
gaagtactggctgaagttctacttgaggcatatgctggtgctgtcacagctaaagttgag
cgaggaggagaacacaaggggctgctagatgagtattggaatagacgggattcccttctt
aactccctctacaaacaagtgaaatattttgtggaaggcgggcaccaggttttaaatgta
agaactgatgagccagatgaggaaatccttagaaagctaacttcaaatttgttgtcaatt
tcaaaaagacatgaagggtacaatactatgtggagtatatgttgtgacatcaacgattca
gcgctgctcagaaatcttatgcacgacagcatgggaccaaagggaggtttcagttacttc
gtgtttaaacaactgtatgaaaagaggcaaatctcaaagcttctaagacttggagaagag
ttccaggaagagctatctatttttctgaagcatcaccgaaatctgctgtggcttcatgaa
ttgtttctgcatcagttttcctcagcttctgaaactcttcatgtattggccctttctcaa
gatgagacctcaatatcagaagctgaagagaccacagaccatgtgcaaaacagatttata
accacactggcagatagaaagcgtcttttgaacctctcaaagattgctatcatggcaggt
aagactactgactcggagacaaagatgaagcgaattgaagcagatttgaagattttgaaa
ttgcaggaagaaattctgaaagtacttcctgccaatgaagcaaatcaatacgatggacag
aggctcttccgtcctgaagaactcatagagctgtgctttaaagttcaaaacccagagctt
gcattgcggggctttgatgtgtttgcatggactagctcctcatttcgtagaagtcacaga
aaccttctggaggagtgctggaagaatgctgctgatcaggatgactggggtcaactccat
caagcatctaaagatgaagggtggagtgatgaggaaatcttgcagcaactgagagataca
gtgctcttccaggcatcaagcagttgttatggacccaacgcagaaatcatcgatgaaggt
tttgatgctgtcttgccattgagaaaagaaaactctggagtttcagcattggaagatttg
gatttctctgtagaagcaatactgatgcagcacaaggattaccctgatgcaggaaagcta
atgctgacagcaatcatgttaggaagtgtacatgacaattcaaaagtagaagagaatcct
tcttcaatggagtaa
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integrated database retrieval system
