Populus trichocarpa (black cottonwood): 7490367
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Entry
7490367 CDS
T01077
Name
(RefSeq) protein NEDD1 isoform X1
KO
K16547
protein NEDD1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7490367
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pop04812
]
7490367
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
7490367
Microtubules and associated factors
gamma-tubulin ring complex
7490367
Cytoskeleton proteins [BR:
pop04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
7490367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
EIF3I
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_SCAP
NBCH_WD40
Beta-prop_DCAF4
Optomotor-blind
Motif
Other DBs
NCBI-GeneID:
7490367
NCBI-ProteinID:
XP_002315198
LinkDB
All DBs
Position
10:19094727..19101122
Genome browser
AA seq
794 aa
AA seq
DB search
MINLADPSMSLLAASGGDTVKLFDVSVDPGDPCTLNYTPTPGCVVNSVKWNHTNLVVASA
GEDKKISLWRKNGQNMGTIPVSGTDSRDSIEESLSAISFSNKGSRYICSGGSGQVVRIWD
LQRKRCIKSLRGHTSTITGAMYNCKDEHLASISLSGDLILHNLASGARATELKDPHEQVL
RVLDYSRVSRHLLVTAGDDGSVHLWDITSRSPKVSWLKQHSAPTVGISFSPSNDKIIASV
GLDKKLYTYESGSRRHTSLISYEAPFSSLAFRDDGLILAAGTSSGRVVFYDVRGKPQPFT
VLHAYGSSEAVTSLCWQRSKPVIVNESTCTPEIALLGGAVDDSILMPDPLPSVTSSSVAL
STSVSGSGNTGRSGLSIESSSLTAITSGPASTMSNLTLAEETPHQSHLWPGTLMKLNPRS
SYNFKDEMEVFSPLADVQPITPSLDKFWDDQEGLKKDNLSVDKKPSSLLFPSSIRRFPFQ
EDGINDHPIFDWKSSSTSRQDEARSFTLPGGSTPSPSSKSEDSSITPPEAWGGERLSDSI
AHLPQPLNLPSRFAMTSGSSTLGSMFSSLQDLSSSTNQTGTSSLNNSSCSFSNLHTRDVS
LNQETSMGFPEHISSSSMSLSLGTKHITELASLEASGPASLNQPRRFSTFAERINTTASF
SDGTSLSVVSPKTKKTGVETREELLNSILSRSDALAVTEPGILPAMNGGATQPHKILQPD
TQQGSSFTLQLFQRTLEETLDSFQKSIHEDMRSLHIEILRQFHMQEMELSGVMNSILENQ
AELMKEIKSLGKEN
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacttggcggatccatcaatgtcgttgctggcggcgagtggtggcgacaccgtg
aagcttttcgatgtatcagtggatccaggagatccatgcactttgaattacacaccaact
ccgggttgcgttgttaactcagtcaagtggaatcatactaatttagttgtggctagtgct
ggagaagacaagaagatttcgctgtggaggaaaaatgggcagaacatggggacaattccg
gtttctgggacggatagcagggacagcattgaggaatctttatcagctattagctttagt
aacaagggatctagatatatatgctctggaggaagcggtcaagtagtaagaatatgggat
ctgcagaggaagcgctgtattaaatcgttgaggggtcataccagtacaataacaggtgct
atgtacaattgcaaagatgagcacctggcttccataagtttgagtggggatcttatcctt
cacaaccttgcatctggtgcaagggcgacagaactcaaggacccacacgaacaggtacta
agggttcttgattattcacgagttagccgacaccttttagtgaccgcaggtgatgatggt
tctgtacatttgtgggatataaccagtcgcagcccaaaggtttcatggttgaaacaacat
tctgctccaactgttggtattagcttctcaccgtcaaatgacaagataatagctagtgtt
ggactggataaaaaactatacacttatgaatcagggtctagaaggcacacatctctcatt
tcttacgaggcgcctttttcttcgctggcttttagagatgatggtttgattctggcagct
ggaaccagtagtgggagggtggtgttctatgatgttcgaggaaaaccacagcctttcacc
gttctccatgcttatggcagttcagaggctgttacaagtttatgctggcaaagatcaaaa
ccagttattgtaaatgagagcacctgcactcctgagatagctcttttgggaggtgctgtt
gatgattccattcttatgccagatcctcttccttctgtaacatcatctagtgttgctcta
tccacctcagtatctggctctggtaatactggtcgttcaggtctttcaatagaatcatca
tctctaacagcaatcactagtggacctgcatcaaccatgtccaatctgactttagcagag
gaaacaccacatcaaagccatctttggcccggaacattgatgaaattaaatcctcgttct
agttacaatttcaaggatgaaatggaggtgttttccccgcttgcggatgttcagcctatc
acaccctcacttgataagttttgggatgatcaggagggattgaaaaaggataatctatct
gttgataagaaaccttcatcgttgttgtttccttcatccattaggagatttccttttcaa
gaggatgggatcaatgatcatcccatatttgattggaaatccagttcaacctcaaggcag
gatgaggcccggtctttcaccttaccagggggatctactccatctccatcttccaagagt
gaagattcctccatcactcctccagaagcttggggtggtgagagactatctgatagtatt
gctcacctaccccagccactaaatttaccatctcgttttgcgatgacttctgggagttca
acattaggatcaatgttttctagtttgcaagatctgtcctcttcaacaaatcagacaggt
acgagctcattgaataattccagctgcagcttttcaaatctgcacaccagagatgtctct
ttgaatcaggagacttcaatgggatttccagaacacatttcctccagttccatgtctctg
tcattaggtacaaaacacatcacggaactagctagccttgaagcatctggaccagcatca
ttaaaccaacctcgcaggttttcaacttttgctgagagaataaacactactgcttccttc
agtgatgggacatccctctcagtggtttcaccaaaaacaaagaaaacaggagttgaaact
agggaagagctgctgaatagcatattgtcgaggtctgatgcattggcggtcacagaacca
ggaattcttccagcaatgaacggaggagccacacagccacacaaaatccttcagccagat
acacagcaggggagttcgttcacgcttcagctcttccagcgtactcttgaagaaactctt
gattcatttcagaaatccatacatgaggatatgaggagccttcatatagaaattcttaga
caatttcatatgcaggagatggaattgtccggtgtgatgaactcaatcctggaaaaccaa
gctgaactgatgaaagaaatcaagtctcttgggaaagaaaactaa
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