Populus trichocarpa (black cottonwood): 7490384
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Entry
7490384 CDS
T01077
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC2A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7490384
04121 Ubiquitin system [BR:
pop04121
]
7490384
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7490384
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
7490384
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7490384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-rbx1
zf-C3HC4
zf-RING_11
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-RING_5
zf-C3H2C3
zf-HC5HC2H
FYVE_2
Prok-RING_4
CxC4
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
7490384
NCBI-ProteinID:
XP_024467099
LinkDB
All DBs
Position
10:19350131..19351948
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AA seq
403 aa
AA seq
DB search
MSSPTTPSYWCYRCNRFVQVWRQDSVTCPECESGFIEEIENPPHMIQTEASRERHRRRSP
AAGTMFMIGNRSNPHRRNRRGGAAGSGDRSPINPVIVLRGGPGGAAEDVVGDDGGRGGGG
FELYYDDGGGSGLRPLPPSMSEFLLGSGFERLLDQLTHIEMNGGFGRYENQHPPASKLAI
ESMPTVIINESHTFTESHCAVCKEAFELESEAREMPCKHIYHTDCILPWLSIRNSCPVCR
HELPSGDDDGEDGVGSPLPEAGNGQGNNEEEAVGLTIWRLPGGGYAVGRFTGARRGEREL
PVVYTEMDGAFNNGGLPRRISWGSRGGGRRENGGGVNGGRDGGNRGFGFGRVLRHWFACF
GVGRGSSSNSRVTGRNRPSPVFSSSSSMRRRGWGAEINTGRRR
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctccaactacgccgtcgtattggtgctatagatgcaaccgtttcgttcaggtt
tggagacaagactcggtaacttgcccagaatgtgaatccgggttcattgaagaaatcgaa
aaccctccgcacatgattcaaacagaagcatcacgtgaaaggcaccgcagacgttctccc
gctgccggaacgatgttcatgatcggtaaccgctcaaacccccatcgccgtaaccgtcgc
ggtggagccgccgggagcggagaccggtccccgatcaatccagtgatcgtgcttcgtggc
gggcctggaggggcggcggaggacgtagtgggagatgacggtggccgcggtggtggaggg
ttcgagctttattatgatgacggtggtgggtccgggttgaggccgttgccgccgagcatg
tcggaatttttattgggatcagggtttgagagattgttagatcagttaacacatattgaa
atgaatggagggtttggccgctatgagaatcagcacccgccggcgtcaaagttggcgatt
gaatcgatgcctacggtaattattaacgaatctcatacttttaccgaatcgcattgtgct
gtttgtaaggaggcttttgaattagaatccgaagcacgagagatgccttgtaaacatatc
tatcatactgattgtatacttccttggttatctattcgtaattcttgtccggtttgtcga
catgaattgccctctggtgatgatgacggtgaggatggggttgggagtccgttacctgaa
gcagggaatggacagggaaataacgaggaggaggcagttgggctgacgatatggaggtta
cctggaggagggtatgcggtggggaggtttacaggggcgaggaggggagaaagagagttg
cccgtggtttatacagagatggatggtgcgtttaacaatggtgggttgccgaggaggata
tcttgggggtctagagggggtggaaggagggagaatggtggtggggttaatggtggtaga
gacggtggtaatagagggtttggttttgggagagttttgaggcattggtttgcttgtttt
ggcgtgggacggggttcgagttcaaactccagagtcactgggaggaataggccttctcct
gtttttagcagttcctcttcgatgaggagaaggggttggggcgctgagattaatactgga
aggagacggtga
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