Populus trichocarpa (black cottonwood): 7490662
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Entry
7490662 CDS
T01077
Name
(RefSeq) auxin response factor 5 isoform X1
KO
K14486
auxin response factor
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7490662
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Gene cluster
GFIT
Motif
Pfam:
Auxin_resp
B3
AUX_IAA
PB1
Motif
Other DBs
NCBI-GeneID:
7490662
NCBI-ProteinID:
XP_002300719
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Position
2:1607043..1613169
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AA seq
933 aa
AA seq
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MGSAEEKIKTGGIINGAQTNLLEEMKLLKEFQDQSGTRKAINSELWYACAGPLVSLPQVG
SLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNVTLHADKDTDEIHAQMSL
QPVNSEKDVFPVPDFGLKPSKHPSEFFCKALTASDTSTHGGFSVPRRAAEKLFPPLDYSM
QPPSQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRNEKSH
LMVGVRHANRQQTTLPSSVLSADSMHIGVLAAAAHAAGNRSPFTIFYNPRACPSDFVIPL
IKFRKTVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWD
EPGCSDKQNRVSSWEIETPESLFIFPSLTSGLKRPLQSGFLGDTEWGGLVKKPLALLPGS
GNASLPYASMSNMYSEQLINMLMKPQAVNYPGICGTALPEVSAVKVGSLDVKNMQAAINQ
TPQLNQSGITPIENQNYSQICLDQSNAMNSYSSKANVAGKSLSLSKVENQASVGGVDGKF
KAKPEHLPDQLSQPTSTGECIVQKPISCPMTQQNATNHLVFQNQNQGQSQLQASLWPMQA
LAESSLLNSQQIRASLADATTPNCSLPFLDAGEWISHPMSIDSMCRSGPLSMFGLQDPSL
PFMHQDAWDHQMSNLRILSEANQLIPLAQQEPCSFNSGAVKDSSDESNDQSGIYGSLNID
ASNGGGSVYDRSVSSAILDEFCTLKDADLQNASDCLVGNLSSSQDVQSQITSASLADSQA
FSRQDFPDNSGGTSSSNIEFDNSNLLQNNSWQQVAPRVRTYTKVQKTGSVGRSIDVSSFK
NYEELCSAIECMFGLDGLLNNPKGSGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILS
PSEVQQMSEEGMKLLNSANIQGINTPITEGIHA
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgggttctgctgaagagaaaatcaaaacaggagggattattaatggagctcaaacaaat
ctgctcgaggaaatgaagctgttgaaagaatttcaagaccagtctgggacacggaaggca
ataaactcggagctgtggtacgcttgtgcaggtccgctagtttccttgccccaggttgga
agtctggtgtattatttccctcaaggacacagtgagcaggtggccgtttccactaagaga
tcagctacttcacagattcccaactacccaaatctcccttctcagttactgtgccaagtt
cacaatgttacccttcatgcagacaaagatacagatgaaatccatgctcaaatgagtctt
caaccagtgaactctgaaaaagacgtcttccctgtaccagattttgggctaaagcccagc
aagcatccgagtgaatttttctgcaaagctttgaccgctagtgatacaagtacacatggt
gggttctcagtgccacgcagggcagcagaaaagctcttccctccattggattactcaatg
caaccaccatctcaggagcttgttgtcagggacttgcatgataatacctggacatttcgc
catatataccgcgggcagccaaagcgacaccttcttacaactgggtggagcttatttgtt
ggttcaaaaaggcttaaagcaggtgattctgttctgtttatcaggaatgaaaagtcccac
ttgatggtgggtgtgaggcatgcaaaccgtcaacaaacaacattaccatcatcagttcta
tctgctgatagcatgcacattggtgtccttgctgctgcagctcatgctgctggcaatcga
agcccattcaccattttttacaatccaagggcatgcccttcagactttgtcattccattg
attaaattccggaaaactgtatttgggactcaagtctcagttggtatgagatttggaatg
atgtttgagacagaagagtctggaaaacgcagatatatgggcacaatagttggtattagt
gacttagatccattgaggtggcctggttccaagtggcggaatcttcaggtagagtgggat
gagcctgggtgttctgataagcagaacagggttagttcatgggaaattgagactcctgaa
agtctctttatttttccctctctgacttctggtctcaaacgacccttgcagtctggattt
ttaggagatactgaatgggggggtttggttaaaaagcctcttgcattgcttccagggagt
ggaaatgcaagtcttccatatgcttcaatgtcaaacatgtattctgaacaactgattaac
atgctaatgaaacctcaagctgttaactatcctggaatctgtggaactgcactaccagaa
gtatctgctgtgaaggtgggttcattagatgttaagaacatgcaggcagcaattaatcag
acgcctcagctaaaccagtcaggaattacgcccatagaaaaccaaaactattcccagatc
tgtctagaccaatccaatgccatgaactcatattcatcaaaagcaaatgtagctgggaag
tcactttctttgagcaaagttgaaaatcaagcgtcagttggaggagttgatgggaaattc
aaagcaaaacctgagcatttgccagatcagttaagccagccaacctcaacaggagagtgc
attgtgcaaaaaccaatctcgtgtcctatgactcagcagaatgccacaaatcatctggtg
ttccaaaatcagaatcagggccagtcacaattacaagccagcctctggcctatgcaggca
cttgcagagtcatcgctacttaattcccaacagatccgtgcatctctagctgatgccact
acaccaaactgctctcttccatttctagacgcaggcgaatggatatcacatccaatgtct
attgacagtatgtgtagatcaggaccgttgtctatgtttggattacaagatccctcttta
ccttttatgcatcaagatgcgtgggatcatcagatgagcaatttgagaattttatctgaa
gcgaaccaattgattcctttggctcagcaagagccatgtagcttcaactcaggtgcagtg
aaggattcatctgacgagagcaatgatcaaagtggaatttatggttctcttaacattgat
gctagcaatggtggtggttctgtgtatgatcggtctgtctcaagtgctattctagatgag
ttctgcacattaaaggatgctgatttgcagaatgcttcagattgtctagttggcaacctc
agctcaagccaggatgttcagtctcagattacctcagcaagcctagcagattcccaagct
ttctcacggcaagactttcctgacaactcaggtggcacatcttcaagcaacattgaattt
gataatagcaatctgctccagaataactcatggcagcaagtagccccacgtgtgcgcaca
tataccaaggttcagaagacagggtctgttgggaggtcaattgatgtctcaagtttcaaa
aattatgaagaactatgctccgctattgaatgcatgtttggacttgatgggctgctaaat
aaccctaaaggttctgggtggaaattagtatatgtggactacgagaatgatgttctactc
ataggtgatgatccttgggaggaattcgttggctgtgttcgctgcattaggattctgtca
ccttcagaagttcagcagatgagtgaggagggaatgaagcttctcaacagcgccaacatc
caaggcatcaatacccccatcacagagggtatccatgcttga
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