KEGG   Populus trichocarpa (black cottonwood): 7490755
Entry
7490755           CDS       T01077                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03082  ATP-dependent chromatin remodeling
pop03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    7490755
   03083 Polycomb repressive complex
    7490755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    7490755
Enzymes [BR:pop01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     7490755
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     7490755
   HDAC complexes
    Sin3A-HDAC complex
     7490755
    BRAF-HDAC complex
     7490755
    REST complex
     7490755
    SHIP complex
     7490755
    MiDAC complex
     7490755
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     7490755
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    7490755
  Chromatin remodeling factors
   NuRD complex
    7490755
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 7490755
NCBI-ProteinID: XP_002300554
UniProt: B9GGG8
LinkDB
Position
1:complement(48561574..48565861)
AA seq 429 aa
MRSKDRIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSEDYVEFLHRITPDTQHLFAGELARYNLGEDCPVFENLFEFCQIYAGGTIDAAHRL
NNQLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKELGEREGKFYAINVPLKDGIDDTSFTRLFKT
IISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPDYSLKSPGGLMENLNSKSYLSTIK
MQVLENLRCIQHAPSVQMQEVPPDFFIPDFDEDEQNPDERMDQHTQDKQIQRDDEYYEGD
NDNDHADGS
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgcgctccaaagacagaattgcctatttctatgatggtgatgtgggcagtgtttatttt
ggaccaaaccatccaatgaagccacacagactttgtatgacacaccatcttgttctctct
tatgagctacataagaagatggaaatttatagaccacacaaggcatatcctgttgagctt
gctcagtttcattccgaggattatgttgaatttttgcatcggattacgccggatactcag
cacttgttcgcgggggaattggctagatataaccttggagaagattgccctgtctttgaa
aacttatttgaattttgtcagatttatgctggtggaactatagatgctgcacataggttg
aacaatcaactgtgtgacattgctataaattgggccggtggattacatcatgcaaaaaag
tgcggggcatctggtttttgttacatcaatgacctggttttggggattttggagcttctg
aaacaccatgctcgtgttctgtacattgatatagacgttcatcatggtgatggtgttgaa
gaagccttttatttcactgacagggtgatgactgtgagttttcacaagtatggagatatg
ttctttcctggaactggtgatgttaaggaactaggagaaagagaaggaaaattttatgct
ataaatgttccactgaaagatggaatcgatgacactagcttcactcgactatttaaaaca
atcatttccaaggttgtagaaacttatcagccaggtgcaatagttcttcaatgtggagca
gattcgttggctggggaccgcttgggctgcttcaatctttccattgatgggcatgcagaa
tgtgttaggtttgtgaagaaattcaacttgcccttgttggttacaggaggtgggggatac
acaaaagagaatgttgctcgatgttggaccgttgaaacaggagttcttttagacacagaa
ctgcccaatgagattccagaaaacgagtatattaaatattttgcccctgattattcattg
aaaagtcctggtggactcatggagaacttaaatagcaaatcttatcttagcacaatcaaa
atgcaagtactagagaatcttcgttgcatccaacatgctccaagtgtacagatgcaagag
gtacctcctgacttcttcattcccgattttgatgaagatgagcaaaaccctgatgagcgc
atggatcagcatacccaggacaagcaaatccaacgtgacgatgaatattatgaaggtgac
aatgataacgaccacgcagatggctcatga

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