Populus trichocarpa (black cottonwood): 7490793
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Entry
7490793 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7490793
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7490793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7490793
03041 Spliceosome [BR:
pop03041
]
7490793
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7490793
Spliceosome [BR:
pop03041
]
Complex B
Other components
Prp19-related factors
7490793
Complex C
7490793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_19
TPR_15
TPR_12
ARM_TT21
UTP6_C
Motif
Other DBs
NCBI-GeneID:
7490793
NCBI-ProteinID:
XP_002305003
UniProt:
B9H231
LinkDB
All DBs
Position
4:2788958..2794002
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AA seq
908 aa
AA seq
DB search
MSISKELYPSQDDLLYEEEILRNPFSLKLWWRYLIARRESPFKKRFIIYERALRALPGSY
KLWHAYLVERLDIVRNLPITHPQFETLNNTFERALVTMHKMPRIWIMYLQSLIRQKLVTK
TRRAFDRALCALPVTQHDRIWELYLSFVSQEGFPIETSLRVYRRYLMYDPSHIEDFIEFL
LNSGLWQEAAERLASVLNDNQFYSIKGKTKHSLWLELCDLMTRHAKEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
AIKMEKMDLSDDEENEVEENGIELDEDVRLDWSSKFEKKLLNGFWLDDDNDVDLMLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPH
TLWVAFAKLYEDHNDLVNARVIFDKAVQVNYKTVDNLASVWCEWAEMEIRHRNFKGALEL
LRRATAEPSVEVKRRVAADGDEPVQIKVHKSLRLWAFYVDLEEGLGTLESTRAVYERILD
LRIATPQIIINYAWLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK
LERARELFEHAIEMAPADSVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKLSMY
EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYADLEKNLGEIDRARGIYVFA
SQFADPRSDLDFWNQWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQR
LNIDDAKDKLKQAGLPEDEMAALERQLAPAINKTTARDSSRTVGFVSAGVQSQSDGGMQV
TANQEDIELPEESDSEDDEKVEIAQKDVPSAVFGGLAGKREEPEKDDAKDGGSRLGALER
IKRLKRGG
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttccaaagagctgtacccttctcaagatgatcttctctacgaagaagaaatc
ttgagaaaccctttttctttgaagctctggtggcgttatttgattgcccgaagagaatcc
ccgttcaagaaacgcttcataatttatgaacgagctctcagagcgttgcctggaagctac
aagctctggcatgcttatttggttgagcggctcgatatagttcggaatttgcccattact
catcctcagtttgaaactcttaataacacttttgagagggctttggttactatgcataag
atgcctaggatctggattatgtatttgcagagtttgattcgtcagaagttagtgacgaag
acgaggagggcttttgatagggctctctgtgcgttgcctgttacacagcacgataggatt
tgggagttgtatttgagttttgtgagtcaagagggttttcctattgagacctctcttagg
gtttataggaggtatttgatgtatgacccgagtcatattgaagattttattgagtttttg
ttgaattctgggctttggcaagaggctgcagagaggttggcgtcggtcttgaatgataat
cagttttattcaattaaggggaagaccaagcatagcttgtggcttgagttgtgtgatttg
atgactaggcatgcgaaggaggtttcagggttaaacgtggatgcaattattaggggtggg
attaggaagtttacagatgaggttgggaggctgtggacctcgcttgctgattattatatc
aggagggaattgtttgagaaggcaagggatatttttgaggaggggatgactactgtggtt
actgttagggatttcagtgttattttcgacgcttactcacaatttgaagagagtatggtt
gctatcaagatggagaaaatggatttgagcgacgatgaggaaaatgaggttgaagagaat
ggtatcgagttggatgaggatgttcggttggattggagttccaagtttgagaagaagtta
cttaatggcttttggttagatgatgacaatgacgtggatttgatgctagcacgtctggag
tatctaatggatagaagaccagaattagcaaatagtgtgcttcttcgacaaaatccacat
aatgtggagcagtggcataggagggtcaagctatttgagggtaatccaacgaagcaaatt
ctgacgtatactgaagctgtgaggacggtggatccaatgaaagcagtggggaagcctcat
actttgtgggttgcatttgcaaaattgtacgaggatcacaatgatcttgtcaatgcaagg
gtaatttttgacaaggcagtgcaagtgaactacaagactgtcgataatttggcaagtgta
tggtgtgagtgggctgaaatggaaattagacacaggaatttcaaaggtgcgcttgagctg
ttgagacgggccaccgcagaaccatcagttgaggtcaaacggagagtggctgctgatggg
gatgaaccagttcagataaaggttcataagtccttgagactctgggctttttatgttgat
ttggaggagggcctgggtaccttggagtccactcgagcagtgtatgaacggatactggac
ctgcgcatagccaccccacaaatcatcatcaattatgcttggcttctagaggaacataaa
tactttgaagatgcattcaaggtatatgaaaggggagtcaaaatattcaagtatcctcat
gtgaaagacatttgggtcacatatctctcaaagttcgtgaagagatatggcaagacaaaa
ctagagcgggcgagggagttgtttgaacatgctattgaaatggctcctgctgactcggtg
aaaccgttgtatcttcaatatgcaaagctagaagaggactatggtttggcaaagcgagcc
atgaaggtatacgatcaagcaaccaaggctgttccgaacaatgaaaaactgagcatgtac
gaaatttatattgctcgtgcagctgagatatttggtgttccaaaaacaagggaaatatat
gagcaagcaatagagtctggccttccagacaaagatgtgaagacaatgtgcttgaagtat
gctgacttagagaagaaccttggagaaattgaccgtgcacgtggcatatatgtatttgca
tcccaatttgctgatccacgatctgatttggatttctggaaccaatggcatgagtttgag
gttcaacatggaaatgaagataccttcagagaaatgttgcgtattaaacgaagtgtgtct
gcaagctatagccagacacattttattcttcctgagtatttgatgcagaaggaccagaga
ctgaacattgatgatgccaaagacaaattgaaacaggctgggctccctgaagatgaaatg
gccgctctagagaggcaattagctcctgcaatcaataaaaccactgctagagatagcagc
aggacagtgggctttgtgagtgctggagtgcaatctcagtcggatggagggatgcaggtt
actgcaaaccaggaagacattgagcttccagaagagagtgactctgaagacgatgaaaaa
gttgaaattgcacagaaggatgttccctctgctgtgtttggtggactggctgggaagagg
gaagagcctgagaaagatgatgcaaaggatggtggcagtcgtcttggtgccctcgagagg
attaagagactaaaacgtggaggatga
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