Populus trichocarpa (black cottonwood): 7490819
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Entry
7490819 CDS
T01077
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
7490819
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7490819
Enzymes [BR:
pop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
7490819
Protein phosphatases and associated proteins [BR:
pop01009
]
HAD phosphatases
Fcp/Scp phosphatases
7490819
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
7490819
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SPOC_CPL1_2
dsrm
NIF
Motif
Other DBs
NCBI-GeneID:
7490819
NCBI-ProteinID:
XP_024454947
LinkDB
All DBs
Position
4:3175314..3184981
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AA seq
996 aa
AA seq
DB search
MYKSVVYKGDELLGEVEIYAQEQQQEEEENKNKKKRVIDEIVKEIRISHFSQTSERCPPL
AVLHTITSIGVCFKMEESTSSSTTKISQQESPLHLLHSSCIQENKTAVMHLGGEELHLVA
MPSRSNERQHPCFWGFSVAPGLYDSCLVMLNLRCLGIVFDLDETLIVANTMRSFEDRIDA
LQRKISTEVDPQRILGMLSEVKRYHDDKNILKQYVENDQVVENGKVIKTQSEVVPALSDN
HQPMVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTM
AERDYALEMWRLLDPESNLINSKELLDRIVCVKSGLRKSLFNVFQDGICHPKMALVIDDR
LKVWDERDQSRVHVVPAFAPYYAPQAEVNNAVPVLCVARNVACNVRGGFFKEFDEGLLQK
IPEVAYEDDTDNIPSPPDVSNYLVSEDDASAVNGNRDQLSFDGMADAEVERQLKEAVSAS
SAILSTIPSTVSSLDPRLLQSLQYTIASSSSSMPTSQPSMLASQQPMPALQPPKPPSQLS
MTPFPNTQFPQVAPSVKQLGQVVPPEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGH
DSRDNAPSESPFPARPSTQVSAPRVQSVGSWVPVEEEMSPRQLNRTPREFPLDSDPMNIE
KHRTHHPSFFHKVESNIPSDRMIHENQRQPKEATYRDDRMKLNHSTSNYPSFQGEESPLS
RSSSNRDLDLESERAFSSTETPVEVLQEIAMKCGTKVEFRPALIATSDLQFSIETWFVGE
KVGEGTGKTRREAQRQAAEGSIKKLAGIYMSRVKPDSGPMLGDSSRYPSANDNGFLGDMN
SFGNQPLLKDENITYSATSEPSRLLDQRLEGSKKSMGSVTALKEFCMTEGLGVNFLAQTP
LSTNSIPGEEVHAQVEIDGQVLGKGIGLTWDEAKMQAAEKALGSLRTMFGQYTPKRQGSP
RLMQGMPNKRLKQEFPRVLQRMPSSARYHKNASPVP
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgtataaatcagtggtgtataaaggagatgagttactgggagaagtagaaatatacgca
caagaacaacagcaagaagaagaagagaacaagaacaagaagaagagagtgattgatgag
atagtgaaggaaatcagaataagccatttctcacaaacaagtgagagatgtccaccactt
gcagtgcttcatacaattacatctattggtgtttgcttcaaaatggaagagtcaacttca
tcatcaacaacaaagatctctcaacaagaatcgccgcttcatcttttgcactcctcctgt
atccaagaaaacaagactgcagtgatgcatctgggaggggaggagctccatttggttgca
atgccctccaggagtaatgaaagacagcatccatgtttctggggattcagtgttgcacca
ggactttatgactcttgtcttgtcatgctgaacctcagatgcctgggcattgtatttgat
cttgatgaaactctcatagttgcaaatacaatgcgctcatttgaagatagaattgatgct
ttgcagcggaaaataagcactgaggtggacccgcagcgcattcttggtatgctgtcagag
gtcaagaggtatcacgatgacaagaacattttgaagcaatatgtggaaaatgatcaggtt
gttgaaaatggaaaggtgatcaaaacacagtctgaggttgttccagccctgtctgacaac
catcaacctatggttcgccccttgatacggttgcaagagaagaacattattttgactcgt
atcaatccgcagattcgtgatacaagtgtgcttgtgaggttgagacctgcttgggaggat
ctgagaagctacttgactgcaagagggcgcaagcgctttgaggtttatgtttgcacaatg
gctgaaagagattatgctttagaaatgtggaggcttttggatccagagtcaaacttgata
aactcaaaagaattgctagatcggattgtgtgtgtcaagtctggtttaaggaagtccttg
ttcaatgtctttcaagatggaatatgccatcctaagatggcattggtgatagatgatcgc
ttgaaagtgtgggatgagagggatcaatcccgtgtgcatgttgttcctgcatttgctcca
tactatgctcctcaagctgaagtaaataatgctgttccagtattgtgcgttgcgagaaat
gttgcttgcaatgtcagaggtggtttcttcaaagaatttgatgagggccttctgcagaag
atacctgaggttgcatacgaagatgatactgataatattccttctcctcctgatgtgagc
aactatttagtttcagaggatgatgcttctgctgtaaatggaaatagagatcaactttct
tttgatggcatggcagatgctgaggttgaaagacagctaaaggaagcagtttcagcttct
tcagcaatcctctcaactattccttcaacagtcagtagcttagatccaaggcttcttcag
tctctccagtacacaatagcatcttcttcaagctcgatgccaacatcacaaccttcaatg
ctggcatcacaacaaccaatgccagcattacaaccaccaaagcctccatcacaactatca
atgacgccatttcccaacacacagtttcctcaggtggctccatcagttaaacaattgggc
caggttgtccctccagaaccaagcttgcaaagttctcctgctcgagaagagggtgaagta
cccgaatctgaattagatcctgatacaaggaggcggcttcttatattacaacatgggcat
gattcaagagacaatgcaccaagtgaatctccatttcctgcaagaccttcaacacaagtt
tcagctccacgtgtgcaatctgttggaagctgggttccagtggaggaagagatgagccca
aggcaactgaaccgaacacctagagaatttcctctggattcagatccaatgaatattgaa
aagcaccgaactcaccatccatcctttttccataaggttgagagtaatattccgtctgat
aggatgattcatgagaaccaaagacagccaaaagaggcaacatatagagatgatcggatg
aagctaaaccattcaacatctaattatccttccttccaaggggaggagagtccattgagt
agatcatccagtaacagggatcttgacttggaatctgaacgagctttttcaagcacagaa
actccagttgaagtgttacaggaaattgcgatgaagtgtggaaccaaggtggaattcagg
cctgctttgattgctactagtgatctgcagttttccattgagacttggtttgtaggagag
aaagttggtgaaggaactggtaaaacaagaagggaagcccaacgccaggcagctgagggt
tctattaagaagttagctggcatatatatgtcacgtgtgaagcctgattctgggcccatg
cttggggattcaagtagatatcctagtgcaaatgataatggtttcttgggtgatatgaat
tcttttgggaatcaaccattgctgaaagatgagaacattacgtattcagctacttcagag
ccatccagacttctggatcaaaggctggaaggctctaagaaatcaatgggttcggtcact
gcactcaaagaattttgcatgacggagggtcttggggtaaattttctggcacagactcca
ctttcaactaattcaataccgggagaggaggtacatgcacaggttgaaatagatggacaa
gttctggggaagggtattgggttgacatgggatgaagctaagatgcaggctgctgaaaag
gcccttggaagtctaagaacaatgtttggtcaatacacaccaaaacgtcagggttcccct
aggctaatgcaagggatgccaaataaacgtctaaagcaagagttcccacgggttctgcag
cgcatgccctcttctgctagatatcacaagaatgcttctcctgttccttga
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