Populus trichocarpa (black cottonwood): 7490830
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Entry
7490830 CDS
T01077
Name
(RefSeq) KH domain-containing protein At4g18375
KO
K21444
poly(rC)-binding protein 3/4
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7490830
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
7490830
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
MOEP19
KH_Vigilin
Motif
Other DBs
NCBI-GeneID:
7490830
NCBI-ProteinID:
XP_002305041
UniProt:
B9H2A6
LinkDB
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Position
4:complement(5685008..5692195)
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AA seq
623 aa
AA seq
DB search
MVESGKRSRPQRDYDGDTNNQKRHKDNKGTDNDELVVYRILCPDEVIGSVIGKSGKVINS
IRNESRARVKVVDPFPGAMYRVITIYCNVKEKGDADVDDDFHQADPLCPAQDALLKVHAA
ISNAVAALGDSDKRCRDKKECQILVPTSQSANIIGKAGATIKKLRSKTRANIKITAKDAS
DPTHSCAMDFDNFLLITGESEAVKKALFAVSAIMYKFSPKEEIPLETTVPEAPPSIIISS
DVPIYQPGGFYPNADPIVSSRSVPPILGATHIPEFQGYGDMRSSWPIYSSTVPVVPSFGN
TSRSELIIRLLCPFDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADRDECIITVIATES
PDDLKSMAVEAILLLQGKINDEDNDIVGIRFLVPSKVIGCIIGKSGAIVNEIRKRTNADV
CISKVDKLKCADSNDELVEVAGEVGSVRDALVQIVLRLRDDVLKEKDGGLNSSVGTDSVY
PVHAGISIPSILPSVPPVVPMGYDQRAESGSGLGLFSSSSLYGYGSLPMGENSYGSLASY
SLSKLYEGLPPPSTLEMLVPANAVGKVIGKGGANIANIRKISGAMIEISDAKSARGDRIA
YISGKPEQKQAAENLIQAFIMAT
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggtggagagtggcaaacgatcgcgtccccaaagagattatgatggggataccaataat
cagaagaggcacaaagataataaaggtactgataatgatgaactggttgtgtatagaata
ctatgccctgatgaggttattggaagtgtcattggtaaaagtggaaaagtcatcaattcc
ataaggaatgagtcgagggcgagagttaaggtggtggacccgtttccaggtgccatgtat
agggtcataacaatttattgcaatgtcaaggagaagggagatgctgatgttgacgatgat
ttccatcaggctgaccctttgtgtcctgcacaagatgctcttcttaaagttcatgctgca
atttcaaatgctgttgcagctcttggggactctgacaagagatgcagagataagaaggaa
tgccaaattcttgtcccaactagccagtctgcaaatattattggtaaggctggggcaact
ataaagaaattgagaagcaagaccagagccaacattaaaatcactgccaaagatgcctct
gatccaactcactcatgtgctatggactttgacaactttcttctgataactggtgaatca
gaagcagtgaagaaagcattgtttgcagtttctgcaatcatgtataagttcagtccaaaa
gaagaaattccccttgagacaactgtaccagaagctcctccaagcatcattatatcatca
gatgtccctatttatcaaccgggtggattctatccaaatgcagatccaattgtttcttct
agatctgttccaccaatcttaggcgctacacatataccggagtttcagggttatggggat
atgaggagttcttggcccatttattcatccacagtccctgtagttcccagttttggcaac
acctctagatctgagttaattatacgactattatgcccatttgacaagattgggcgtgtc
attggcaagggagggagtaccattaaaagcataaggcaggttagtggtgctcgtattgag
gttgatgacactaaggctgatcgagatgagtgtattattacagtcattgcaactgagtct
cccgatgatttgaaatccatggcagttgaagctattttattgcttcaaggaaagattaat
gatgaagacaatgacattgttggcattcgattccttgttccatctaaagttattgggtgt
atcataggaaaaagcggtgcaattgtaaatgaaattcgaaagagaactaatgctgatgtc
tgcatctcaaaagtggataaacttaagtgtgctgatagtaatgatgaacttgttgaggtg
gctggagaagttggtagtgtgagagatgcacttgtccagattgttctaaggctcagagat
gatgtattgaaagaaaaggatggtggtctgaattcttctgttggtactgattctgtctac
cctgttcatgctggtatttctataccatctatcctgccttctgttcctccagttgttcca
atgggttatgatcagagggctgaaagtggcagtggtttgggcctgttttcatcaagcagc
ctttatggatatggatccttaccgatgggagaaaatagctatggttctctggcctcgtat
tctttgtctaagctgtatgaaggattgcctccaccctcaactcttgaaatgctggtgcct
gctaatgcagttggtaaagtgattggtaaaggaggagcaaatatagccaacatccgaaag
atatcaggagcaatgatagaaatctctgatgccaagtctgcaaggggtgatcgtattgct
tatatatctggcaaaccggagcaaaaacaggctgctgaaaacttgatccaggcatttatt
atggccacttaa
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