Populus trichocarpa (black cottonwood): 7490841
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Entry
7490841 CDS
T01077
Name
(RefSeq) pumilio homolog 5
KO
K17943
pumilio RNA-binding family
Organism
pop
Populus trichocarpa (black cottonwood)
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Gene cluster
GFIT
Motif
Pfam:
PUF
PUF_NOP9
NABP
Motif
Other DBs
NCBI-GeneID:
7490841
NCBI-ProteinID:
XP_024462273
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Position
8:complement(171293..177632)
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AA seq
993 aa
AA seq
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MATESPMRMVESGGARKWSSSKDSAVLGSPLRSMAAEELGLLLKRQGFHGDETDTIPSRS
GSAPPSMEGSFAAIGNLLAQHNSGMSSSLESLGSVIENCESEEQLRSDPAYFAYYCSNVN
LNPRLPPPLLSRENRRLVHHIGGFGNNWRPESGNGSLQLPKSSLSTHKEEPNEDRSPRGA
SENSGVYISGQNTTSLAGRHKSLVDLIQEDFPRTPSPVYSQSRSSSHAAEVGIDHDVHAI
SSNVSSASMSKISESNAGSDVCVDTYALEVDALRLVSINDPPSADLPTSPCRAGTPTQQK
GESSTKGTGFEVDASIRGSRQSGSARMELRTKNKQDQQTYGRNIPQHHSHSQQGIPHQVQ
VISQGTNPSHSSMGKPSHGYPKFSSTEVLTSSHSPAMNPPFYAPQGAYMTAGTPFYQPSS
VYPPQYNMGGYAVGSAFISPYMPGFPSHSTIPVSFGGAPGPSNDGRTADASAVQQIGSLQ
HLAKFYGQHGLMLQPSFVDPLHAQLFQHPFGDVYSATPHNRLASSGTTGPQIDSFIPQKD
LAAAAHMANQKVLTSTNGGLSIPVPGKIGISGGSYYGGPPSMGVITHFPASPLTSPVLPS
SPVGGVNHLSRRTDLRFPQGSNRNAGLYFRGQEQRAVNSADDPKRHYFLEELKSNNARKF
ELSDVAGRIVEFSVDQHGSRFIQQKLENCNVEEKESVFKEVLPHAPKLMTDVFGNYVIQK
FFEHGSPEQRMELAEKLSGQILQLSLQMYGCRVIQKALEVIELDQKAKLAQELDGHVMRC
VHDQNGNHVIQKCIECVPAEHIEFIISAFRGQVVTLSTHPYGCRVIQRVLEHCSDELQSQ
CIVDEILESSYLLAQDQYGNYVTQHVLERGKPHERSQIISKLTGKIVQMSQHKYASNVVE
KCLKHADAAERELMIGEIIGQSEENDNLLIMMKDQFANYVVQKILETSNDKQKEILLSRI
NAHLNALKKYTYGKHIVARFEQLCVEEGQVLET
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggctactgaaagccccatgagaatggtggagagtggtggtgctagaaagtggtccagt
tctaaggattctgctgtacttggatcacccttaagaagtatggcagcagaggaattagga
ttgcttctgaagaggcagggattccatggcgatgaaactgacacgattcccagtcgaagt
ggcagcgcaccaccaagtatggaggggtcatttgctgctattggaaaccttttagctcaa
cacaactcaggcatgagttctagcttggaaagtttaggcagtgttattgaaaattgtgag
tcagaagaacaactccgctctgatccagcctactttgcatactactgctccaatgtcaac
ttgaatccaaggcttcctccaccactattgtcacgggagaatcggcgcctggtgcaccat
attggtggttttgggaataattggagacctgaaagtggcaatggatccctgcaactcccc
aaaagttccctttcaactcacaaggaggagccaaatgaagatagatcacctagaggagct
tcagaaaatagtggcgtgtatatatctggacagaacacaacttctttggcaggtcgacat
aagagtttggtggatctcattcaggaagacttccctcgcactccttctcctgtatacagc
cagtcccgttcctcaagccatgcagcagaagtaggaattgatcatgatgtccatgcaatt
tcatcaaatgtttcttctgccagcatgtccaaaatatcagaatcaaatgctggttctgat
gtttgtgttgatacgtatgcactggaggttgatgctttgaggttagtatccatcaatgat
cctccaagtgctgatttgccaacttcaccatgtcgtgctgggactccaacccagcaaaaa
ggtgaatccagcactaaaggtactggatttgaggttgatgcctcgattagaggttcccgt
caatcaggctctgccagaatggagttgagaacaaaaaacaaacaagatcagcaaacttat
ggaaggaatataccacagcatcattcacacagccagcaaggcattccacatcaggttcaa
gtgatttctcaaggtacaaatccatctcacagtagcatgggaaaaccttcccatggttat
cctaaattctcctccactgaggtacttacatcatcgcattctcctgcgatgaaccctcct
ttctatgcaccacaaggagcttatatgactgcagggactcctttttaccagccatctagt
gtataccctccacagtataatatgggtggatatgctgttggatctgcgtttatttctcca
tatatgcctggatttccatctcacagcactattcctgtgtcatttggcggtgctcctggt
ccaagcaatgatggtcgaactgctgatgcttcagcagttcaacaaataggtagcttgcaa
catctggccaagttttatggacaacatggattaatgctacaaccttcctttgtggaccct
cttcacgcacaactctttcaacatcctttcggggatgtatatagtgctactcctcataat
cgtttggcatcaagtggaactactgggcctcagattgattctttcattccacagaaagat
ttggcagctgctgctcatatggccaatcagaaagttctaacttcaacaaatggaggttta
agcattcccgttccaggaaaaataggaatttctggtggtagctattatggaggtccccca
agcatgggcgtcataacccatttcccagcctcacctcttaccagtccagtgcttccatca
tctccagtaggcggagtcaatcatctaagtcggcgaactgacttgagatttccccaaggt
tccaatagaaatgcaggattatatttcagaggtcaagaacagagagcagttaacagtgct
gatgaccccaaaaggcattactttcttgaagaactaaaatcaaacaatgcccggaaattt
gaactctctgatgtagcagggcgcatagttgaattcagtgttgaccaacatggcagtcga
tttattcagcaaaaactggaaaattgcaatgttgaggaaaaggagtctgtatttaaagaa
gttcttcctcatgctccaaaactaatgacagatgtttttggaaattatgttattcaaaaa
ttttttgaacatggaagtcctgaacagagaatggagcttgcagaaaaactttctggacag
attttgcagttaagtttgcaaatgtatggttgtcgtgtaattcagaaggccctcgaagtg
attgagcttgatcagaaagcaaaacttgctcaagagcttgatgggcatgttatgagatgc
gtacatgatcaaaatggaaaccatgtaatacagaagtgtatagaatgtgtacccgctgag
catattgaatttatcatatctgcgtttcgaggccaagttgtcacactgtcaactcatccc
tatggttgccgtgtcattcagagagttttggagcattgttctgatgagctgcaaagtcaa
tgtatagttgatgagatcttagaatcttcctaccttcttgctcaagaccagtatggcaac
tatgttacccagcatgttttggagaggggaaagccccatgagagaagccaaattataagc
aagttgactgggaaaattgtacaaatgagtcagcataagtatgcatcaaatgttgtcgag
aagtgcttgaagcatgctgatgctgctgaaagggagctcatgattggggagattattggg
cagtctgaggaaaatgacaacttgctgataatgatgaaggaccaatttgccaattatgtt
gtccaaaagatacttgaaacaagcaatgataaacagaaggaaatattgctcagtcgtatc
aatgcccaccttaatgctctgaagaagtacacttacgggaagcacatcgttgcccggttc
gagcaactatgcgttgaagaagggcaagtgctggaaacttga
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