KEGG   Populus trichocarpa (black cottonwood): 7491062
Entry
7491062           CDS       T01077                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03030  DNA replication
pop03410  Base excision repair
pop03420  Nucleotide excision repair
pop03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    7491062
   03410 Base excision repair
    7491062
   03420 Nucleotide excision repair
    7491062
   03430 Mismatch repair
    7491062
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pop03032]
    7491062
   03036 Chromosome and associated proteins [BR:pop03036]
    7491062
   03400 DNA repair and recombination proteins [BR:pop03400]
    7491062
DNA replication proteins [BR:pop03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    7491062
  DNA Replication Termination Factors
   ELG1-RFC complex
    7491062
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    7491062
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     7491062
  Check point factors
   HRAD17(Rad24)-RFC complex
    7491062
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_lid_RFC1 RuvB_N AAA_22 DUF815 AAA_5 AAA_23 Mg_chelatase nSTAND6 RsgA_GTPase AAA_2 ABC_tran AAA_29 AAA_16 AAA_24 SprT-like nSTAND3 T2SSE TsaE TPGS1_C ATPase_2
Other DBs
NCBI-GeneID: 7491062
NCBI-ProteinID: XP_024446819
LinkDB
Position
19:complement(5507984..5513365)
AA seq 354 aa
MLWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG
TSAEKVKVENRTWKIDAGSRTIDLELTTLSSTNHVELSPSDVGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
CLNVRINAPKEEQIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQY
PFSSNQAIPPMDWEEYVSEICSDIMREQSPKRLFQVRGKLYELLINCIPPEIILKKLLSE
LLKKLDEELKHEVCHWAAYYEHRMRMGQKAIFHLEAFVAKFMSIYKAFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggttgacaagtacagacccaaaaccctagaccaggtcatcgttcatcaagaa
atcgccgaaaacctcaagaaactggtcactgaacaagactgtccacatttgctcttctat
gggccctctggttctggcaagaaaaccctaatcatggcccttctccgccagatctttggc
accagtgccgaaaaggtgaaggtggaaaataggacatggaaaatcgatgctggaagtaga
accattgatctagagctgaccacattgtcaagcacaaatcatgtggagctgagccctagt
gatgtaggattccaggacagatatatagttcaggagataattaaagagatggctaagaat
aggccaatcgatacaaaaggaaaaaaaggatataaggtactagtgctcaatgaggttgac
aagctttcaagagaagcacagcattctcttcgtagaacaatggaaaaatacagtgcctcc
tgccgtctaattctttgctgcaacagttcttcgaaggttactgaagcaattaggtctcgc
tgtctgaatgtgagaataaatgcacctaaggaggaacagattgttaaggtattggaattt
attggaaagaaagaaggactacagcttccacctggatttgcagctcgcatagcagataaa
tcaaataggagtttgagaagagctatactttcatttgagacttgccgtgttcaacaatat
ccgttttcaagtaatcaagcaattcctccaatggactgggaggagtatgtttctgaaata
tgttcagacattatgagggagcagagccctaaaaggctgtttcaggttcgagggaaattg
tatgaactgcttattaactgtattccaccagaaattattctgaagaagctactttctgaa
ttattgaagaaattggatgaggaattaaagcatgaagtctgccattgggctgcatattat
gaacataggatgcgtatgggacagaaagccatatttcaccttgaagcgtttgtggccaag
ttcatgagcatctataaggctttcctcattgctacatttggctga

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