Populus trichocarpa (black cottonwood): 7491062
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Entry
7491062 CDS
T01077
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
7491062
03410 Base excision repair
7491062
03420 Nucleotide excision repair
7491062
03430 Mismatch repair
7491062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
7491062
03036 Chromosome and associated proteins [BR:
pop03036
]
7491062
03400 DNA repair and recombination proteins [BR:
pop03400
]
7491062
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
7491062
DNA Replication Termination Factors
ELG1-RFC complex
7491062
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
7491062
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
7491062
Check point factors
HRAD17(Rad24)-RFC complex
7491062
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
DNA_pol3_delta2
RCF1-5-like_lid
AAA
Rad17
Sigma54_activ_2
AAA_lid_RFC1
RuvB_N
AAA_22
DUF815
AAA_5
AAA_23
Mg_chelatase
nSTAND6
RsgA_GTPase
AAA_2
ABC_tran
AAA_29
AAA_16
AAA_24
SprT-like
nSTAND3
T2SSE
TsaE
TPGS1_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
7491062
NCBI-ProteinID:
XP_024446819
LinkDB
All DBs
Position
19:complement(5507984..5513365)
Genome browser
AA seq
354 aa
AA seq
DB search
MLWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG
TSAEKVKVENRTWKIDAGSRTIDLELTTLSSTNHVELSPSDVGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
CLNVRINAPKEEQIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQY
PFSSNQAIPPMDWEEYVSEICSDIMREQSPKRLFQVRGKLYELLINCIPPEIILKKLLSE
LLKKLDEELKHEVCHWAAYYEHRMRMGQKAIFHLEAFVAKFMSIYKAFLIATFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgggttgacaagtacagacccaaaaccctagaccaggtcatcgttcatcaagaa
atcgccgaaaacctcaagaaactggtcactgaacaagactgtccacatttgctcttctat
gggccctctggttctggcaagaaaaccctaatcatggcccttctccgccagatctttggc
accagtgccgaaaaggtgaaggtggaaaataggacatggaaaatcgatgctggaagtaga
accattgatctagagctgaccacattgtcaagcacaaatcatgtggagctgagccctagt
gatgtaggattccaggacagatatatagttcaggagataattaaagagatggctaagaat
aggccaatcgatacaaaaggaaaaaaaggatataaggtactagtgctcaatgaggttgac
aagctttcaagagaagcacagcattctcttcgtagaacaatggaaaaatacagtgcctcc
tgccgtctaattctttgctgcaacagttcttcgaaggttactgaagcaattaggtctcgc
tgtctgaatgtgagaataaatgcacctaaggaggaacagattgttaaggtattggaattt
attggaaagaaagaaggactacagcttccacctggatttgcagctcgcatagcagataaa
tcaaataggagtttgagaagagctatactttcatttgagacttgccgtgttcaacaatat
ccgttttcaagtaatcaagcaattcctccaatggactgggaggagtatgtttctgaaata
tgttcagacattatgagggagcagagccctaaaaggctgtttcaggttcgagggaaattg
tatgaactgcttattaactgtattccaccagaaattattctgaagaagctactttctgaa
ttattgaagaaattggatgaggaattaaagcatgaagtctgccattgggctgcatattat
gaacataggatgcgtatgggacagaaagccatatttcaccttgaagcgtttgtggccaag
ttcatgagcatctataaggctttcctcattgctacatttggctga
DBGET
integrated database retrieval system