Populus trichocarpa (black cottonwood): 7491150
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Entry
7491150 CDS
T01077
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7491150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7491150
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
7491150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
7491150
NCBI-ProteinID:
XP_002314284
UniProt:
B9HQC2
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Position
9:2022650..2026784
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AA seq
257 aa
AA seq
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MASTGGAAPGTYTPTPTKKTQRSSFFSDSDVDWLRPDGRGFHQCRPAFFRTGAVNSAAGS
AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFATPARGLGSDNKEFSSMLH
KALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSC
LGRNLIIDPILEEESFQDGSLMITCMPSRYEVTQLSITGEWSTAKLNEAMQLCLDACSKL
DKIMRACLKEAASASLD
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacaggtggtgctgccccaggcacttacactcccactcccaccaagaaaacc
caacgttcttcattcttctctgactctgatgtcgactggcttcgtcccgatggtcgtggt
ttccaccagtgccgacctgcttttttcaggactggtgcggtgaattctgctgcaggatct
gcatatgctgaatttggaaatacaaaggtcatcgtttctgtgtttgggcctagagaaagt
aagaaagcaatggtgtacagtgatgtgggcaggcttaattgcaatgttagctgtaccact
tttgccacccctgctcgtggactgggatcagataataaagagttctcttccatgcttcat
aaggctttggaaggcgcaatcatgttggaaacttttcccaagacaactgtagatgtgttt
gcattggtgttagaatctggcggcagtgatcttcctgttgtaatatcttgtgcaagcctt
gccttggcggatgcagggattatgatgtatgaccttgttgctggagtttctgtgtcttgt
cttggtagaaacctcatcattgatccaattttggaagaggaaagttttcaagatggaagc
ctgatgatcacttgcatgccttctcgttatgaggtcacgcagctttctattacaggggaa
tggtcaactgcaaaactgaatgaggcaatgcagctttgcttggatgcttgctcaaagctg
gacaagataatgagggcatgtttgaaagaggctgcttcagcttcactggattag
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