Populus trichocarpa (black cottonwood): 7491280
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Entry
7491280 CDS
T01077
Name
(RefSeq) cellulose synthase-like protein D5
KO
K00770
1,4-beta-D-xylan synthase [EC:
2.4.2.24
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00520
Amino sugar and nucleotide sugar metabolism
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
7491280
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pop01003
]
7491280
Enzymes [BR:
pop01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.2 Pentosyltransferases
2.4.2.24 1,4-beta-D-xylan synthase
7491280
Glycosyltransferases [BR:
pop01003
]
Polysaccharide
Structural polysaccharide
7491280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cellulose_synt
zf-RING_4
zf-UDP
Glyco_tranf_2_3
Baculo_IE-1
Xin
Motif
Other DBs
NCBI-GeneID:
7491280
NCBI-ProteinID:
XP_002320989
LinkDB
All DBs
Position
14:complement(8406795..8411159)
Genome browser
AA seq
1166 aa
AA seq
DB search
MVKRASSPCSSPVTITVSSGGKGGGSRSMGLTSPVPRASISNNPNSPLSNSRNRTPSGGR
YCSMSRDDTTEEINSEFVSYTVHIPPTPDHQSFSASQTSLAEDITNAAKPERSFISGTIF
TGGFNSVTRGHVVDCSMENNESLKSGLVCGMKGCDEKAIRGKCECGFKICRDCYLDCVGS
NGGGHCPGCKEPYKDADDEAEDDDDYDYDEAKSEADDQALPLPKLDKRLSLVKSFKAQSH
PPDFDHTRWLFETKGTYGYGNAVWPKDGYGAGSGANGFEPPPDFGERSRRPLTRKVGVSA
AILSPYRLLIMIRLAALGLFLTWRIRHPNREAMWLWGMSITCELWFGVSWILDQLPKLCP
VNRVTDLSVLKQRFESPSLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDY
PVEKLACYLSDDGGSLLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFGQKRDFLKNK
VRLDFVRERRRVKREYDEFKVRINSLTESIRRRSDAYNAHEELRARKNQMEMGGNPSEIV
KVPKATWMSDGSHWPGTWTSGEADHSKGDHAGVIQAMLAPPNAEPVFGVEADGENLLDTT
EIDIRLPMLVYVSREKRPDYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLAL
REGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTG
CIFRRTALYGFSPPRTTEHYGWFGRKKIKLFLRKPKAAKKQEDEMALPINGDQNSDDDDA
DIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQETGKQGRPAGSLAVPREPLDAATVA
EAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDAFRGTAPI
NLTDRLHQVLRWATGSVEIFFSRNNALFATRRMKFLQRVAYFNCGMYPFTSMFLIVYCVL
PAISLFSGQFIVQSLSVTFLVLLLAITITLCLLAILEIKWSGITLHDWWRNEQFWLIGGT
SAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDADDEFADLYVVKWSFLMVPPITIMMLN
LIAIAVGVARTLYSPFPQWSRLVGGVFFSFWVLSHLYPFAKGLMGRRGRVPTIVYVWSGL
LSIIISLLWVYISPPGTQDYMKFQIP
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaaagggctagttctccatgttcatctccagtgaccataacagtctcctcagga
ggcaaaggaggaggaagtagaagcatgggcttaactagtccagtaccaagagcttccatt
tcaaacaacccaaattcccctcttagcaacagtagaaacagaaccccaagtggaggcaga
tactgttcaatgtccagagatgataccacggaggagattaattcagagttcgtctcctac
actgtccatatacctcccactccagatcaccagagcttctcagcttcacagacaagccta
gctgaagacatcacaaatgctgccaaacctgagaggagtttcatttctggtactattttc
actggtgggttcaattctgtcacacgcgggcatgtagttgattgctcaatggaaaacaac
gagtctctgaaatctgggcttgtttgtggaatgaaaggttgtgatgagaaagcaattagg
ggaaaatgtgaatgtgggttcaagatttgtagagattgttatttagattgtgtagggtct
aatggaggggggcattgtcctggttgcaaggaaccatacaaggatgctgatgatgaagct
gaggatgacgatgattatgattatgatgaggctaaaagtgaagcagatgatcaggcacta
ccattgcctaaattggataagaggctttcacttgtgaagtcgtttaaggcgcagagccat
cctcctgattttgaccatactaggtggttgtttgagacgaaggggacttatggttatgga
aatgctgtgtggcctaaagatgggtatggtgctggatcaggtgctaatggatttgagcct
cctccagattttggagagagaagtaggaggcctttgaccaggaaggttggggtttctgct
gcaattctcagcccttacagactactcatcatgatacgtcttgcggctcttggtctattc
ctaacatggagaatccgacaccccaatcgcgaagcaatgtggttgtgggggatgtccata
acttgtgagttatggtttggtgtgtcatggattcttgatcagctccctaagctctgccct
gtaaacagagtgactgacctctctgtgctgaaacagcgctttgaatcccccagtcttcga
aacccaaaaggccgatcagaccttccaggcattgatgtgtttgtttccacggctgaccct
gaaaaagagcctcctttggtcactgcaaacaccatcctttcgatccttgcagttgattat
ccggtagaaaagctggcttgttacttatcagatgatggtggatctcttttgacgtttgaa
gctctggctgagacagctagctttgccagaatttgggttcctttctgtaggaaacacaat
atagaacccaggaaccctgaggcttattttgggcagaaacgcgattttcttaagaacaaa
gtgagacttgattttgttagagagaggagaagagtaaagagagaatatgatgaatttaag
gtgaggatcaattcactgacggagtcaattaggagaagatcagatgcctataatgcccat
gaagagcttcgagcgaggaagaatcagatggaaatggggggcaatccatcagaaattgtg
aaggtaccaaaggctacctggatgtcagatggttctcattggccgggaacttggacttct
ggagaagcagaccactcaaaaggagaccatgcaggtgtaatccaggctatgctagctcct
ccaaatgcagaacctgtttttggtgtagaagcagatggtgaaaacttgcttgacaccaca
gaaattgatatcagattgccaatgttggtctatgtgtctcgagagaaaaggccagattat
gatcacaacaagaaagctggggcaatgaatgctttagtgagaaccagcgcaatcatgtca
aatggtccattcattctgaatctggactgtgatcactacatctataactccttggctttg
agggaagggatgtgctttatgcttgataggggtggtgataggatctgttatgttcagttc
ccacaaaggtttgaagggattgatccaagcgatcggtatgctaaccataatacagtattc
tttgatgtgagcatgagagctcttgatggcctacagggtcctatgtatgttgggacaggt
tgtattttccgcagaacagctctttatgggtttagtcctcctagaactacagagcactac
ggatggtttggtaggaagaaaattaaactgttcttgaggaaacccaaggccgcaaagaag
caagaggatgagatggctttgccaatcaatggggaccagaatagcgatgatgatgatgca
gatattgagtctttgcttctgcctaaaaggtttgggaactctacttctctagctgcatcc
atcccagttgcagaataccagggaaggctgcttcaagatttgcaagaaacgggtaaacaa
ggaagaccagctggttcccttgcggtgcctcgtgagcctttagatgctgcaactgttgca
gaggcaattagtgttatctcttgtttctacgaggacaaaactgagtggggaaaaagagtc
ggatggatatatggttcggtaacagaagatgtggtgactggttatcgtatgcacaataga
ggatggaggtcgatttattgtgtaaccaaaagggatgcatttcgaggcacagcacccatt
aatctaacagacaggctccaccaagtccttcgatgggcaacaggctcggtagaaatcttc
ttttcacggaacaatgctctatttgctactcgccggatgaaattcttacagagggtggca
tatttcaactgcggaatgtaccctttcacatccatgtttctcatagtttattgcgtccta
cctgcaatttctcttttttctggccagttcatagtccaatccctcagtgtgacctttcta
gtcctcttgttggccatcaccatcaccctatgcttgcttgcaattctagaaatcaaatgg
tcaggaatcacacttcatgattggtggcgaaacgaacagttttggttgattggtggaaca
agtgcccatcctgcagcagttttacaaggactactgaaggttatagcaggagttgacatc
tcattcactttgacatctaaatctgccacgcctgaagatgcagatgatgaatttgctgac
ttatatgtggttaagtggagctttttaatggtccctcctattacaataatgatgctgaac
ctgattgcaattgcagtaggagttgcaagaactttgtatagcccatttccacagtggagc
aggctcgttggaggagtgttcttcagcttctgggttttgtcccatctttacccctttgcc
aaaggcttgatgggaaggaggggaagggtcccaaccattgtctatgtgtggtccggattg
ctctccatcatcatttctttgctgtgggtgtacattagtcctcctggaacacaagactac
atgaagtttcagatcccttga
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