Populus trichocarpa (black cottonwood): 7491325
Help
Entry
7491325 CDS
T01077
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7491325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7491325
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
7491325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
LRR_NXF1-5
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
7491325
NCBI-ProteinID:
XP_002321035
UniProt:
B9I9W7
LinkDB
All DBs
Position
14:complement(9037687..9040528)
Genome browser
AA seq
584 aa
AA seq
DB search
MLRKANSFPEEVLQHVLSFITNDKDRNAVSLVCKSWYEIERWCRKRIFVGNCYAVRPEMV
IRRFPELRSVELKGKPHFADFSLVPDGWGGCVYPWIAALATAYPWLEEISLERMVVSDES
LKVIAKSFKNFKVLVLSSCEGFSTDGLAAVAANCRNLRGLDLRESEVDDPSGQWLSRFPD
SFTSLASLNISCLGAEVSFSALERLVGRCPDLKTLRLNHAVPLDKLANLLRGAPQLVELG
TGAYSAELQPDVFSNLAGAFSGCKELRSLSGFWNVFPGYLPAVYPVCSGLTSLNLRYANI
QGADLIKLVSQCPSLQRLWVLDYIEDIGLEALAACCKDLTELRVFPSDPYGAEPNVSLTE
RGLVSVSEGCPKLHSVLYFCRQMTNAALVTIAKNRPSMTCFRLCIIEPRAPDYQTLQPLD
LGFGAIVENYKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSGCE
KLCKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFRACKLLGQKMPRLNVEVIDER
GPPDLRPESCPVEKLYIYRTIAGPRFDMPGFVWTMDEDSVSRFS
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgttgagaaaggcgaattcgttcccggaggaagtgctacagcatgtgttgtcttttatc
acaaacgacaaagacaggaacgccgtatcgctggtgtgtaagtcgtggtacgagatagag
aggtggtgtaggaagaggatatttgtaggtaactgttatgcggtgaggccggagatggtt
ataaggaggtttccggagctcagatcggtggagctcaaaggaaagccgcactttgcggac
tttagtttggtgcctgacggttggggaggttgtgtttacccttggatcgcggcgttggct
actgcgtatccgtggttggaagagattagtttggagaggatggtggtttcagatgagagt
ttgaaggtgattgctaagagttttaagaattttaaggttttggtgctttcgtcttgtgag
ggtttctctactgatggacttgctgccgttgcggccaattgcaggaatctgagggggctg
gatttgcgagagagtgaggtggatgatccaagtgggcagtggttgagccgctttcctgac
tcgtttacatcactcgcgtctcttaatatttcctgcttgggggctgaggttagtttctca
gctctggagcgcctggtaggccggtgtcctgatctgaagactcttcggctcaaccatgct
gtgccccttgacaagcttgccaatcttcttcgcggtgcaccacaactggttgaattgggc
acaggtgcttactcagccgagttgcagcctgatgtattctcaaacctggcaggagctttt
tctgggtgtaaagaactgaggagcctatctgggttttggaatgtttttccaggttacctt
ccagcagtttatcctgtttgttctggcttaacatcactcaacttgaggtatgctaatata
caaggcgctgatctcattaagcttgtcagtcaatgcccaagtttgcagcgcttatgggtg
ctggattacattgaagacattggactcgaagctcttgcagcatgttgcaaggacctgaca
gagttgagggtgtttccatctgacccatatggtgcggaaccaaatgtatccttgacagaa
aggggccttgtctctgtctctgaaggctgtcccaagcttcattcagttctgtacttttgc
cgtcaaatgactaatgctgccctagttacaatagcaaagaaccgtccaagtatgacttgc
tttcgtctttgtattattgaaccacgggctcctgattatcaaacactccagcctctggat
ttgggttttggagccattgttgaaaactacaaggatctccggcgtctttccctctcaggt
ctattgactgatcgcgtgtttgagtacattggaacttatgccaagaagttagagatgcta
tctgtggcatttgctggggatagtgatctgggactccaccatgtgttgtctgggtgcgaa
aagctttgcaaactagagataagggattgtccctttggtgacaaagctcttttggccaat
gctgcaaagctggagacaatgcgatccctttggatgtcttcttgctctgtgagtttcaga
gcatgtaagctgctgggtcagaagatgcctagactcaatgttgaagttattgatgagagg
ggacctccagatttgaggccggaaagctgccctgttgagaagctttatatatacagaacc
attgcggggcctaggtttgacatgcctggatttgtttggacaatggatgaagattctgtg
tcaaggttttcttga
DBGET
integrated database retrieval system
