Populus trichocarpa (black cottonwood): 7491585
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Entry
7491585 CDS
T01077
Name
(RefSeq) vacuolar protein sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
7491585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7491585
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7491585
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
7491585
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
7491585
Exosomal proteins of colorectal cancer cells
7491585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
HTH_10
Motif
Other DBs
NCBI-GeneID:
7491585
NCBI-ProteinID:
XP_002315405
UniProt:
B9HVG5
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All DBs
Position
10:complement(22127606..22131631)
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AA seq
446 aa
AA seq
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MSTATTSFFEPASVTSSGRPVLHQAEVECHLLSPVDLETEPTTTATTTINSLDFPALKSG
LGILTTHRLLWLPSNATTDSSSPISIPLSSVTHIFSPKKSIKSMFHSPRIRFQVSMHSRS
VVVTLVIRGKGDIDGFLTKFWDCWRGRAWETGNDSGGGSSSGSVPASGSVSGGGLYSSDG
SVRLVGVSGILRKEQEMWESTDKSLQEAFHDLNALMRKAKEMVILAEKMRQKLLSGSSSQ
SSSGNDEEMGSKEEMQDWLLSVGIVSPVTKESAGAMYHQQLSRQLADFVRIPLEKAGGMI
NLIDIYCLFNRARGTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQNKSHSDEEVF
ARIKNLVSKPEALRSGITASDAAMTLGIAPAMAKEHLLTAESKGLLCRDISPDGFRFFIN
LFPEINSDDIHMVKDHGIYSLWIKSW
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgccaccaccagttttttcgaaccagcctccgtgaccagcagtggccgtcca
gtcctccaccaagccgaagtagaatgccacctcctctcacctgtagaccttgaaaccgaa
cccaccaccaccgcgacaaccaccatcaattcacttgacttccctgcattaaaatcaggc
cttggaatcctcaccacacaccgcctcctttggcttccttctaatgctacgacagacagt
tcaagtccaatatcaatccctttgagttctgtaactcatatattttcaccaaaaaagtcg
atcaagtcaatgtttcactcaccccggatccggtttcaagtttctatgcattcaaggagt
gttgtggtgactttagtgattagagggaagggagatattgatgggtttttgacaaagttt
tgggattgttggagaggaagggcttgggagactggtaatgatagtggcggtgggtcaagt
tcggggtctgttccggcttctgggtcagtttcgggtggtgggttatactcgagtgatggg
tcagtgaggctagtgggtgtgtctgggatattgaggaaagagcaggagatgtgggaaagt
actgataagagcttgcaagaggcttttcatgacttgaatgctcttatgagaaaggccaaa
gaaatggtcatcctagcagagaagatgaggcagaagcttttgtctggatcgagctctcaa
agtagttctgggaatgatgaggaaatgggttccaaagaagagatgcaagattggctgttg
agtgttggtatcgtatctccagtaacaaaagaatctgcaggtgccatgtatcatcaacaa
ctgtcccgtcagttggcagattttgtcagaattcccctagagaaagctggaggaatgatc
aatcttatagatatctattgcctcttcaatcgtgctcggggcacagaattgatctcacct
gaggatttgttgcaagcatgttctctttgggagaagtttgatgttccagtaatgcttcgg
aaatttgatagtggagtgaaggtcatccagaataagtcccatagtgatgaggaggttttt
gcaagaatcaaaaaccttgtatcaaagcctgaagccctgcggtctggaataactgctagt
gatgctgccatgacattgggtattgctccagctatggccaaggagcatcttctaactgct
gagagcaaaggattgctatgcagggatataagccctgatggatttcgctttttcattaac
ctctttcctgaaatcaattctgatgatatacacatggtgaaggatcatgggatttattct
ctgtggataaaaagttggtag
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