Populus trichocarpa (black cottonwood): 7491863
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Entry
7491863 CDS
T01077
Name
(RefSeq) replication factor C subunit 3 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
7491863
03410 Base excision repair
7491863
03420 Nucleotide excision repair
7491863
03430 Mismatch repair
7491863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
7491863
03036 Chromosome and associated proteins [BR:
pop03036
]
7491863
03400 DNA repair and recombination proteins [BR:
pop03400
]
7491863
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
7491863
DNA Replication Termination Factors
ELG1-RFC complex
7491863
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
7491863
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
7491863
Check point factors
HRAD17(Rad24)-RFC complex
7491863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCF1-5-like_lid
RFC_C
Rad17
RuvB_N
nSTAND3
DUF3969
Sigma54_activ_2
AAA
Motif
Other DBs
NCBI-GeneID:
7491863
NCBI-ProteinID:
XP_024453028
LinkDB
All DBs
Position
3:11976115..11979960
Genome browser
AA seq
451 aa
AA seq
DB search
MASFFNLCFPWLKSKESRSADMSTQPDNSHDHPSDTKDIHCMRKSDENSKRILRTANYEP
LMVTACAASRRSTHLPVAKGERPEVGHTFSWAEKYQPKALKDFICHREKAESIRSTVCRG
HYNHCIFEGPPGVGKRTMALAMLRECAGMDITETKEEIREFDLSGSGPISNIPVKIEVSS
QLIQIDLSEIRWHATEVILDLLQETYINGQAIIVNEAERLSKDAQLRIKSFLQTYRGHCK
VIFCCYDISRLHDLSPLCMVIPLLPPSDEQIVEVLHFIAKKQDIELPDQLANNIAEKSKR
CLQQAIRSFEATWHSNYPFKEEQLVLTGWEKEIADIATSIIEEQSSKRLFLFRQKLQILL
QHNLCPQFVFFTLVEELKRHLDDRIQMQIGVFTQTYNDDQNEDLCIERKKMRNQEELFCG
QMRTRVAGFVRIEEFVAKFMSFYKYNGIKQG
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgttcttcaacttgtgttttccttggttaaaatccaaagaaagtcgcagcgca
gatatgtccacgcaaccagacaattctcatgatcatccttccgacacaaaagatattcat
tgtatgagaaaatcagatgagaacagcaagagaatattgaggacagctaattatgagcca
ttaatggtaacagcatgtgcagcatcacgtagaagcactcatttgccggttgctaaagga
gagaggcctgaagtagggcatactttcagctgggcggagaaatatcagcccaaggctttg
aaggactttatctgtcacagggagaaggctgaatccatccggagtacggtatgccgtgga
cattataatcattgtatatttgaaggacctccaggggtaggaaagagaacgatggctcta
gcaatgcttagagagtgtgctggaatggatataactgagacaaaggaggaaatcagagaa
ttcgatctgagtggaagcgggccaatttctaacattcctgtcaaaattgaagtatcttca
cagctcattcagatcgatctatctgaaataagatggcatgctacagaagtaattttggat
ctactccaggaaacatatataaacggccaagcaattattgtaaacgaggcagagcgtctc
tctaaggatgcccaactccgaatcaaaagcttcctacagacttatagaggccactgcaaa
gtcatcttctgctgctatgatatttccaggctccacgatctcagtcccctctgcatggtt
attccactccttccaccttcagatgaacagattgttgaagtattgcatttcattgctaaa
aaacaagacattgaattacctgaccagttagccaacaacatagcagagaagtccaaacgt
tgccttcagcaagccattcggtcatttgaggccacctggcattcgaattatccctttaaa
gaagaacaactggttttgactggctgggaaaaagaaattgcagacattgctacaagtata
attgaagagcaaagctctaaacggttgtttcttttcagacaaaagcttcaaattctgttg
cagcacaatttgtgtccccaatttgttttttttacattagtggaagaactaaagaggcat
ttggatgaccgaattcaaatgcaaatcggagtctttacccagacatacaacgatgatcag
aatgaagacctctgtattgaaagaaagaaaatgagaaaccaagaagagttattttgtggg
caaatgagaacaagggttgccgggtttgtgaggatagaagaatttgtagctaagttcatg
agcttttacaagtacaacgggataaaacaaggttga
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