Populus trichocarpa (black cottonwood): 7491902
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Entry
7491902 CDS
T01077
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
pop03440
Homologous recombination
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
7491902
03420 Nucleotide excision repair
7491902
03430 Mismatch repair
7491902
03440 Homologous recombination
7491902
03460 Fanconi anemia pathway
7491902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7491902
03032 DNA replication proteins [BR:
pop03032
]
7491902
03400 DNA repair and recombination proteins [BR:
pop03400
]
7491902
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
7491902
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
7491902
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
7491902
MMR (mismatch excision repair)
7491902
DSBR (double strand breaks repair)
HR (homologous recombination)
7491902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
CDC24_OB3
DUF223
BRCA-2_OB1
Motif
Other DBs
NCBI-GeneID:
7491902
NCBI-ProteinID:
XP_002304377
UniProt:
B9GZW2
LinkDB
All DBs
Position
3:complement(12707400..12710911)
Genome browser
AA seq
854 aa
AA seq
DB search
MNLTEGAISKITSGGATSAELKPTLQVTDLKQVQTKQPQQSDRFRLVLSDGSHLQQAMLG
TQINHLVKDGNLRIGSIVQLNQYTCTTVQGRMIIIILELALVAEDCELIGNPVSAQRSSG
PSPSPVAQPGNVNASPKSFGTNSVTGGVVGNQNMSAAPVQSPEINQFHNTPPSSNYGPGR
FAPTNAPPLYPKVEATAGSVPSSGLYVNQNAGYLNPRPEISQPHMGSYSRPPQSAYQQPP
PMYSNRGPVARNEAPPRIIPITALNPYQGRWTIKARVTAKGELRHYNNTRGDGKVFSFDL
LDSDGGEIRVTCFNQVADQFYHQIEAGRVYLISKGNLKPAQKNFNHLRHDLEIFLESTST
IQPCFEDDNTIPKQQFHFRPISDVEDMENNSVVDVIGVVTSIAPTTSLMRKNGTETQKRT
LQLKDMSGRSVELTLWGNFCNAEGQRLQHICDSGGFPVLAVKSGRISEFSGKAVGTISTS
QLFIEPDSPEANRLKEWFDRDGRNTPSLSISRETSTLGRSDVMKTISQIKDERLGTSEKP
DWITVPATVIYVKSDNFCYTACPIMSGERPCNKKVTNNGDGKWRCEKCDQSVDECDYRYI
LQFQIQDHTGISWVTAFQECGEEIMGISAKDLHYLKHEQQDDEGFSKVLRQVLFSRYVFK
LKVKEETFSDEQRVKSTVVKSEKVNYSSQSRLLLDMMEKFKSGNDTSFACKAESSYHNPG
VNNAVIGNFGSRQAGPPGSNPVGSTSYTGNVGLPANQLGQYGNQQNPMFPMQSSSGAYRS
CNSCGATSHSSANCPSMVNAPGQSMGGSYANRTSQGGTGECYKCHQVGHWARDCPGLSSS
GKMGGISKQHVGGF
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgacggaaggagcaatatccaagataacgagcggaggagccacctcggccgaa
ctgaagccgacgctgcaagtgacagatttgaagcaggtgcagacgaagcaaccgcaacag
agtgatcggtttcggttggttttatctgatgggtctcatttgcaacaagctatgcttggg
actcaaattaatcatttggttaaagacgggaacttgcggattggttctattgttcagttg
aatcagtatacttgtactaccgttcaaggccgcatgattattattattctcgaattggcc
ctggtagctgaagattgtgagttgattggaaatcctgtatcggctcaaagatcttcaggg
ccttcaccatcaccggttgctcaaccaggaaacgtcaatgcaagtcctaaatcatttggt
accaactcagttactggtggtgtggttgggaatcaaaatatgtctgcagcacctgtacaa
agccctgagataaatcagtttcataatacacccccttctagcaattatggcccaggaagg
tttgctccaacaaatgctccaccactttatccgaaagtagaagctactgctggatcagtt
ccatcaagcgggttgtatgttaatcagaatgcaggttaccttaaccctagaccagaaatt
tcacagcctcatatgggaagttattcccgccccccacagtcagcatatcagcaaccgcct
ccaatgtacagtaacagaggaccagttgctaggaatgaggctcctccaaggatcattcca
ataacagcattgaatccataccagggtaggtggactattaaggctagggtgactgcaaaa
ggagagctcaggcattataataatactcgtggtgatggtaaagttttctccttcgatctt
cttgattctgatggcggagagatcagagtgacctgctttaaccaggtggctgaccaattc
taccaccagattgaagctggcagggtttatttgatttccaagggaaatttaaaacctgct
caaaagaatttcaaccaccttcgtcatgatctagaaattttcctggagagcacttcaacc
atacagccatgctttgaggatgacaacacaattccaaagcagcaatttcatttccgtccc
attagtgatgttgaagacatggagaacaatagtgttgtggatgtaattggggtggtaaca
tccattgctcccactacttcgttaatgagaaaaaatgggacagaaactcagaagagaacc
ctccaattgaaggatatgtctggtcgaagtgttgaattaaccctctggggaaatttctgc
aatgctgagggtcaaaggctacaacacatctgtgattcaggaggtttccctgttcttgct
gtcaaatcaggtagaatcagtgaatttagtgggaaggcagtggggactatatctacaagt
cagctatttatagaaccagattctccagaggctaacaggctaaaggaatggtttgacaga
gatgggaggaacactccttctctttcaatttctagggaaacttcaactttgggtaggtca
gatgtcatgaagactatttctcaaataaaggatgagaggctaggaacatctgagaagcct
gattggatcactgtccctgcgactgttatatatgttaagtctgacaatttctgctataca
gcttgccccatcatgtcaggggaacggccatgcaataaaaaagtcaccaataatggagat
gggaagtggcggtgtgaaaagtgtgatcaatctgtggatgaatgtgactacagatatata
ctccagtttcagatacaggaccatactggcatatcatgggtgactgcattccaggaatgt
ggtgaggagataatgggtatatctgcaaaagatttgcattatttgaagcatgaacagcaa
gatgatgagggattttcaaaagtacttcgccaggttctgtttagtagatatgtattcaag
ttaaaagtgaaggaggaaactttcagtgatgaacagcgtgtaaagtctactgttgtcaaa
tcagaaaaggtgaattattcatctcagtccaggcttcttctggatatgatggagaagttt
aaatcagggaatgatacttcttttgcctgcaaagcagaatctagttaccataaccctggt
gtgaataatgctgtaattggaaattttggaagcagacaagctggaccaccaggatcaaac
cctgtggggagcaccagctatactggtaatgtcgggttaccagcaaatcaattgggccag
tatggaaaccagcaaaaccctatgttccccatgcaaagttcttccggtgcttatcgaagc
tgcaacagctgtggggccaccagtcatagctcagcaaattgcccaagtatggtgaatgct
ccggggcagtctatgggagggagctatgccaatagaacttctcaggggggcactggtgaa
tgctataaatgccatcaagttgggcactgggcaagagactgccctgggttaagcagctct
ggcaaaatgggaggtatttcaaagcaacatgtgggtggtttctga
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