Populus trichocarpa (black cottonwood): 7492020
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Entry
7492020 CDS
T01077
Name
(RefSeq) polyadenylate-binding protein 2 isoform X1
KO
K14396
polyadenylate-binding protein 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7492020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7492020
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7492020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBD_DEAH11
RRM_7
Nup35_RRM_2
HDV_ag
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
7492020
NCBI-ProteinID:
XP_002300187
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All DBs
Position
1:32220995..32223607
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AA seq
199 aa
AA seq
DB search
MDGDDVDMAAAETNESVPELDDMKKRLKEMEDEAAALLEMQAKVEKEMGSVQDPSASAAA
SQANREEVDSRSVFVGNVDYSCTPEEVQQHFQACGTINRITIRSDKYGQPKGYAYVEFLE
PETVQEALLLNESELHGRQLKVTVKRTNLPGMKQFRARRPNPYMGFPPRGAPMPPYLFSP
YGYGKVLRYRMPMRYSPYG
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgacgatgtggacatggccgctgcagagaccaacgaatctgtaccagaactt
gatgatatgaagaagagactaaaggaaatggaagatgaagctgctgctcttcttgagatg
caggccaaggttgagaaggaaatgggctctgtacaagatcctagtgcttcagctgctgca
tcccaagcaaatagagaggaagtagattctcgatcagtgtttgttggtaatgtggactat
tcgtgcacccctgaagaagtgcagcagcattttcaggcatgtgggacaataaataggatc
actatccgttctgacaagtatggccaaccaaagggttatgcatatgtcgaattccttgaa
ccagagactgtgcaggaggctctccttctgaatgagtctgagttacatggccgccaattg
aaggtaactgttaagcggaccaatctacctgggatgaagcagtttcgcgcgcgtcgaccc
aacccatatatggggtttccacccaggggcgctcctatgcctccttatctcttttctcct
tatggatatgggaaggttctgagatacagaatgccaatgcgttacagcccctatggctga
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